Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04891 ATGGGAAGAGCTCCTTGTTGTGAGAAGATTGGTTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTAACTGATTATATTCAAGAAAATGGTGAAGGATCATGGAGATCCTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAACTACTTGAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCAGTAATAGCAGGACATTTACCAGGACGTACAGATAATGAGATAAAAAACTATTGGAACTCTCATTTAAGGAGAAAAATTTACTGCTTCATGAAGTCATTAAATGAATCACTTCCACCAATTGACATAGCTGCTGTTAACCTAGCTGCTTCAAACAGAAGAAGAGCTAATAGAGGAGCACCAACAACTCAACAACATGCACCAAAGCAAAACCAAAACAACAACAACAAAGAGTTACTTCTTCAAGTTCAGCTACCAACACTACATAAAAGAAAAGCAAATATTGCTAGTGGAGAACAAGAGCTACAACAAGGTTATAATACTAATGATTATGATACAACTAATTCATCATGTCCAAATATGAATGAATTAGTTGATCCTTTGGAACCTTTTGAATGGTTAGATGATGAAATTATTAAACTAAGTTACATGTTTGAAAGTGGAATACTTGTTAATCCTAATTGTGGAGTATTAATGGGAAATAATGATGGTGGTGTTTGGAGTTCATCAAATGGTGGTGAAAGTGGAGAGTGGAATAATAATAATGCTAATAACACTACTAGTTGTAATTCATCTGTGAATTCTGTTTATGAATATCAGTGGCCTGATATGCATTTAGAAGGTAGTAGTGTTCAATCCTACAATCAACAATGGGACATTTGTGATCAACAAGGACAAGATGTTAATGGCTTCTGGGGTACTTCCAATTATCAAGATAATAGCTTTTATCACTGA 1002 0.3563 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDIAAVNLAASNRRRANRGAPTTQQHAPKQNQNNNNKELLLQVQLPTLHKRKANIASGEQELQQGYNTNDYDTTNSSCPNMNELVDPLEPFEWLDDEIIKLSYMFESGILVNPNCGVLMGNNDGGVWSSSNGGESGEWNNNNANNTTSCNSSVNSVYEYQWPDMHLEGSSVQSYNQQWDICDQQGQDVNGFWGTSNYQDNSFYH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04891 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre15g04891 333 MobiDBLite consensus disorder prediction 143 165 - -
Trre15g04891 333 FunFam Myb transcription factor 71 116 - -
Trre15g04891 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre15g04891 333 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 198 - -
Trre15g04891 333 CDD SANT 16 61 IPR001005 -
Trre15g04891 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre15g04891 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre15g04891 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre15g04891 333 SMART sant 66 114 IPR001005 -
Trre15g04891 333 SMART sant 13 63 IPR001005 -
Trre15g04891 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre15g04891 333 Gene3D - 71 116 - -
Trre15g04891 333 CDD SANT 71 112 IPR001005 -
Trre15g04891 333 FunFam Myb transcription factor 11 67 - -
Trre15g04891 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre15g04891 333 MobiDBLite consensus disorder prediction 145 165 - -
Trre15g04891 333 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04891 Trre-Chr15 59040941 59043220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04891 1 230 MYB Transcription Factor Family AT5G49330 52.174 5.98e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g04891 Myb_DNA-binding 3.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04891 K09422 - gmx:100795019 396.356