Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04890 ATGACGCTTCGACCAAATGACAAGCCTAATCCTCGCCGTAACCGCTACAAGGTCGCCGTCGATGCTGAAGATGGTCGCCGTAGACGAGAGGACGACATGATCGAGATTCGCAAGAACAAGCGGGAAGAAAGCTTGCAGAAGAAGCGTCGCGAAGGTGAACCATCTCAATTCCCCACTGTCGAAACTAAACAGATAGAGAATCTTTCTGCAATGATTGCTGGTGTCTCTTCCAACGATCCTGTTGCGCAACTGGAAGCCACCATCGAGTTTCGGACTATACTTTCAAAAGAAGGGAACCCGCCGATTGAAGAGGTTGTTCAATCTGGTGTTGTACCGCGTTTTGTTGAGTTTCTTGTTAGGGAGGACACGCCTCAACTTCAGTTTGAAGCTGCATGGGCTCTCACAAATATAGCATCTGGAACTTCTGAGAATACTAAGGTTGTGATTGATCACGGAGCAGTACCTCTATTTGTTGCGTTGCTTAGTTCATCTATTAGTGAAATTCGAGAACAGGCAGTGTGGGCTTTGGGAAATATTTCTGGTGACTCCCCTAGGTGCCGTGATATAGTGCTTGGCCATGGTGCCCTTGTCTCACTATTGGCCCAATTGAAACAGTACACCCCAATTTCAATGTTGAGAAATGCCGCATGGACTTTATCAAACTTCTGCAGGGGAAAGCCACAGCCTGCATTTGAGCTGGTGAAACCTGTGCTTCCAGCTCTACAGAGTTTGATTTTGTCCGATGATCCAGAAATTTTGACAGATGCTTGTTGGGCTTTATCATACCTTTCTGATGACACAAATGACAAAATCCAAGCAGTTATTGATGCAGGTGTTTGCGGCCAACTGGTGCAACTCCTTCAACACCCATCTACTTCAGTATTGGTCGCTGCTGTTCGTACAGTGGGAAATATTGTCACTGGAGATGATAAGCAGACTCAGTTGATGATCAATCATGGTGTACTCCCTTGCCTTTTGAGCTTATTGACACAGTATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACCATATCAAACATTACAGCCGGAACTATGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTATTGCTCCACTTGTTAGTCTTCTTCAAAATGCAGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATATCAAATGCCACATCTGGTGGAACTCATGAGCAAATCAAGTATCTGGTGGGTCAGGGTTGCATAAAACCACTATGTGATCTGCTTGATTGCCCCGAACCAAGAATTATCTCCCTCTGTTTAGAGGGCCTAGAGAATATTCTGAATGTTGGAGAAGCGGAGAAGAGCTTGGGTAACTCTGGAGATTCCAACTTGTATGCTGAGATGATAGAGGATTCAGAAGGACTGGAGAAGATTGAAAACCTGCAGAATCATGACAACACTCAAATATATGAGAGGGCTGTTAAACTTCTTGAAACATTCTGGTTGGAAGAAGATGAGATGATACTACCTCCAGGTAATGATGATCAATCTGGCTTCATGGCTTCAGTCCCATCTGGTGGATTCAACTTCAACTGA 1557 0.4432 MTLRPNDKPNPRRNRYKVAVDAEDGRRRREDDMIEIRKNKREESLQKKRREGEPSQFPTVETKQIENLSAMIAGVSSNDPVAQLEATIEFRTILSKEGNPPIEEVVQSGVVPRFVEFLVREDTPQLQFEAAWALTNIASGTSENTKVVIDHGAVPLFVALLSSSISEIREQAVWALGNISGDSPRCRDIVLGHGALVSLLAQLKQYTPISMLRNAAWTLSNFCRGKPQPAFELVKPVLPALQSLILSDDPEILTDACWALSYLSDDTNDKIQAVIDAGVCGQLVQLLQHPSTSVLVAAVRTVGNIVTGDDKQTQLMINHGVLPCLLSLLTQYHKKSIKKEACWTISNITAGTMEQIQAVIEAGLIAPLVSLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLDCPEPRIISLCLEGLENILNVGEAEKSLGNSGDSNLYAEMIEDSEGLEKIENLQNHDNTQIYERAVKLLETFWLEEDEMILPPGNDDQSGFMASVPSGGFNFN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04890 518 Pfam HEAT-like repeat 213 263 - -
Trre15g04890 518 SUPERFAMILY ARM repeat 13 490 IPR016024 -
Trre15g04890 518 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Trre15g04890 518 Gene3D - 11 50 IPR036975 GO:0006606
Trre15g04890 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 109 152 IPR000225 GO:0005515
Trre15g04890 518 Pfam Atypical Arm repeat 450 493 IPR032413 -
Trre15g04890 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 363 IPR000225 GO:0005515
Trre15g04890 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 391 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 99 139 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 309 350 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 268 306 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 141 180 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 396 433 IPR000225 GO:0005515
Trre15g04890 518 Pfam Armadillo/beta-catenin-like repeat 354 391 IPR000225 GO:0005515
Trre15g04890 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 278 320 IPR000225 GO:0005515
Trre15g04890 518 MobiDBLite consensus disorder prediction 1 58 - -
Trre15g04890 518 FunFam Importin subunit alpha 11 50 - -
Trre15g04890 518 FunFam Importin subunit alpha 66 489 - -
Trre15g04890 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Trre15g04890 518 PANTHER IMPORTIN ALPHA 10 492 - -
Trre15g04890 518 MobiDBLite consensus disorder prediction 8 56 - -
Trre15g04890 518 Pfam Importin beta binding domain 12 87 IPR002652 GO:0006606|GO:0061608
Trre15g04890 518 PIRSF Importin_alpha 2 517 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre15g04890 518 Gene3D - 66 489 IPR011989 -
Trre15g04890 518 SMART arm_5 226 265 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 267 307 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 309 350 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 98 139 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 182 224 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 395 435 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 141 181 IPR000225 GO:0005515
Trre15g04890 518 SMART arm_5 352 392 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04890 Trre-Chr15 59034936 59038152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04890 113 326 U-box Gene Family AT1G76390 24.186 4.67e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04890 K15042 - gmx:100808498 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04890 15 59034936 59038152 Trre3g01636 3 13063678 13067018 PCT