Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04888 ATGATATCGCGATTACCGAGTCACTGTATCTTCATCATCGTCGTTTTAGCAACAATTTTACTTTCAACGACGTCGTTTACCGATGCACAATCCTGCAACGGCATACTCATTTCTTACTCCTCCGGCATCGGAGTACGTCTTCCTCCGAACGTCACCGACCCAAAGAAACAACCATACCGATTCGAATCGACGTTGACTGTACTCAACAACGGTCTCGATGAGCTCAAGTCATGGAAAGTTTTCGTTGGATTTCAGCACAACGAGTTTTTAGTTTCCGCTTCCAATGCGGTGATCGCTGACGGTACTACTCTCCCCGCCGCCGTTGGAAACGGAACTGTTTTGGCTGGATTTCCAATGACTGATTTGAAAACTGCTGTTGAAACGGCTGGTGACTTGACTCAGATGCAGTCTCAGATCAAGCTCGTCGGTACTGTTTTTGGTGTGGCGCCGCCGGCTATTCCGTTGCCGTCTTCCATCAATCTCGCTAATGATGGATTCATTTGTGGGAAAACCACCGGTCAAGGGAAGAATGGGACTAGTGTGTGTTGCACAAGAGATCCGAAGTTCAAAACAAACATCACTACAGATGAAAAGTTTCTGCCGCGTCAGAATGGCGATCTTACTATTATGTATGATGTGATTCGATCTTATGATTCAAATTACTGGGCAGAAGTTGCTATTACTAACCATAATTCTCTTGGAAGGCTTGATAATTGGAGGTTGAGTTGGGATTGGATGAATGATGAGTTTATATTTTCAATGAAAGGTGCTTATCCGGCTGTTGTGGATGCTTCTGATTGTATCTTTGGTAAGCAAGGTACATTTTACAAGGAAGTTGATTTTGCTAATGTATTGAATTGTGAGAGGAGGCCTACCATTATTGATCTTCCTCCTACTAAGTTCAACGACACCGATATTGGGAAAATTCCTTCTTGTTGCCGGAACGGTACTATATTGCCACCATCCATGGATCCAAGTAAATCTGTTTCAAGATTCCAAATGCAGGTTTTTAAAATGCCGCCGGTGCTTAACCGGTCTGAGCTTTCACCGCCGCAAAATTGGAAGATTAGTGGATCGCTTAACCCTGACTACAAATGCGGTCCTCCGGTTCGTGTTAGTCCTACCGCGAGTCCAGATTCTAGTGGGTTGCCCTTAAACAAAACTGTAATGGCAAGTTGGCAGGTTGTGTGTAACATAACAACAGCCAAGGGAACACCAAATAAATGTTGTGTCTCATTTTCAGCTTATTACAATGAATCAGTTATTCCATGCAAAACATGTGCATGTGGATGTCCCAAGAATGTGGCAAGAACATGTAGTACTACTGCACCTGCTATGTGGCTTCCCTCACAGGCACTCCTTGTTCCTTTCGAGAACCGAACTGCTCAGGCTGTTGCGTGGGCTAGTCTGAAACATCTACCAGTGCCACAACCAATGCCCTGTAGTGATAATTGTGGTGTGAGCATCAATTGGCATTTACTTACAGATTATAATAAAGGATGGAGTGCAAGGGTCACACTTTTCAATTGGGGTGAGACTAACTTTGCAGACTGGTTTGCTGCTGTGCAAATGGACAAAGCTACTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAAGTGCCCTAGAGATAGACGGCGTGAATAATACGATAATAATGCAAGGTTTGGAGGGATTGAACTACCTTGTTGGAGAAACAGATGGAGCTGACCCTCGGAGAGATCCTAGAGTGCCTGGAAAACAACAGTCAGTAATCTCATTCACAAAGAAAACAACTCCTGGAATCAGTATCGTTCGTGGTGACGGGTTCCCTACTAAAGTTTTCTTCAATGGGGAAGAATGCTCTCTTCCTTCTGTACTTCCAACCAGTAGTGCTTCCAGGAAGAGATTTTCCTATGCTACTTTGATGCTTCTACCATTGTTGCTATTCGTCTTCATGTTGTAA 1944 0.4388 MISRLPSHCIFIIVVLATILLSTTSFTDAQSCNGILISYSSGIGVRLPPNVTDPKKQPYRFESTLTVLNNGLDELKSWKVFVGFQHNEFLVSASNAVIADGTTLPAAVGNGTVLAGFPMTDLKTAVETAGDLTQMQSQIKLVGTVFGVAPPAIPLPSSINLANDGFICGKTTGQGKNGTSVCCTRDPKFKTNITTDEKFLPRQNGDLTIMYDVIRSYDSNYWAEVAITNHNSLGRLDNWRLSWDWMNDEFIFSMKGAYPAVVDASDCIFGKQGTFYKEVDFANVLNCERRPTIIDLPPTKFNDTDIGKIPSCCRNGTILPPSMDPSKSVSRFQMQVFKMPPVLNRSELSPPQNWKISGSLNPDYKCGPPVRVSPTASPDSSGLPLNKTVMASWQVVCNITTAKGTPNKCCVSFSAYYNESVIPCKTCACGCPKNVARTCSTTAPAMWLPSQALLVPFENRTAQAVAWASLKHLPVPQPMPCSDNCGVSINWHLLTDYNKGWSARVTLFNWGETNFADWFAAVQMDKATAGFEKMYSFNASALEIDGVNNTIIMQGLEGLNYLVGETDGADPRRDPRVPGKQQSVISFTKKTTPGISIVRGDGFPTKVFFNGEECSLPSVLPTSSASRKRFSYATLMLLPLLLFVFML 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04888 647 PANTHER COBRA-LIKE PROTEIN 7 26 646 - -
Trre15g04888 647 Pfam COBRA-like protein 221 400 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04888 Trre-Chr15 59001159 59003516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04888 32 631 COBRA Gene Family AT4G16120 66.611 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04888 - - gmx:100814396 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04888 15 59001159 59003516 Trre15g04888 15 59001159 59003516 ECH
Trre15g04888 15 59001159 59003516 Trre3g01638 3 13122728 13125026 PCT