Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04887 ATGAATCTTAGCAACGGTAAAGGATCCATTTCTACTGTTACTTCAACTGCTACTATGAAATCCGGTGAAGGTTCCGACCAGTTTCCGGCGGGTTTACGAGTTCTTGTTGTTGATGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGTTACGCACGTGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAGACTGCACTTTCGCTCCTAAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCTGACATGGATGGATTTAAACTGTTAGAACACATTGGATTGGAAATGGACCTTCCGGTTATTATGATGTCTGCGGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACACGGTGCTTGCGATTATCTAATTAAACCTGTTCGTATTGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGAAAGAAAAAGAACGAGTGGAAAGATACAGAGCAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCCGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGAGGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTAGCTGCTGTCGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGCCTCACTCGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGGTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACAATAACTTGAACAACTCATTTCTCAGCCCACAAGAGGCATCATTTGGTACAATTTCACCAATGAACGGTCTTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCTGCCGGACTAGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCGAGGTTGAGATTTGGAGGAGGGCAACAACAACTTTTGAGCAGCAGTAAACCAACAAATCTTCTTCATGGGGTTCCTACTAACATGGAGCCAAAGCAGCTCGCAAATTTGCACCAATCTGCACAATCCCTCGGCAATTTGAATATGCGAGCCACTGGTTCTGCTACGCAGGGTAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATATCAGTCCTCGTGTTCCGAGACTTCCGAACATCTTGGGGCAGCCCACTTTGTCAAACGGAATTTCTGATGGTCTTTTAGGGAGAAATGGCATAGCTAGTAGCAGCAGAGGTCCTTCATTTAATCCTGCTTCACAGAGCTCTTCATATTTGAATTTTCCCATGAATCAAAGCACCGAAATGTCTGTTAGTAATTTCCCTCTCGGAAGCACCCCGGCGGGTATATCAAGTATGTCAACCAAAGGCTTGTTTCAACCGGAAGTTAATTCGGGAATAAGAGCATCTGCTGGTTTTCCAAACTACGATATTTTTAATGACCTGAACCATCAGAAGCCCCGGGATTGGGGGATGGCAAGCCAAGGTCCAATGTATGATTCATCATCACATGCAAATCCTTTGCATGGTAACATTGATGTCTCTCCATCAGTTTTAGTCCAACAAGGTTATTCTTCTACTCAACAACCTGGACATAGCAGAGATGCCTCTTTGATGGGAAAATCTCCTTTCTCTCTCGGCGAAGGCTTGGAACACAGTAATCTCCAAAATGGCGGTCAACACTTCAATCCCCTTCTTGCTGGAAATTCAACAAGGGTCAAGTCTGAAAGCGTTCCCGACGCGAGCTCCCAGACTAACCTCTTCCCTGATCATTACGGGCAGGACGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGTCATTGGACAAGGCGAGAACGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 2034 0.444 MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEDGEDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHNNLNNSFLSPQEASFGTISPMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSFENPRLRFGGGQQQLLSSSKPTNLLHGVPTNMEPKQLANLHQSAQSLGNLNMRATGSATQGNPLLMQMAQSQPRGQMLSENISPRVPRLPNILGQPTLSNGISDGLLGRNGIASSSRGPSFNPASQSSSYLNFPMNQSTEMSVSNFPLGSTPAGISSMSTKGLFQPEVNSGIRASAGFPNYDIFNDLNHQKPRDWGMASQGPMYDSSSHANPLHGNIDVSPSVLVQQGYSSTQQPGHSRDASLMGKSPFSLGEGLEHSNLQNGGQHFNPLLAGNSTRVKSESVPDASSQTNLFPDHYGQDDLMSALLKQQEVIGQGENEFDFDGYSLDNIPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04887 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Trre15g04887 677 PIRSF RR_ARR_type-B 14 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre15g04887 677 Gene3D - 32 203 - -
Trre15g04887 677 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Trre15g04887 677 Gene3D - 209 271 - -
Trre15g04887 677 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Trre15g04887 677 SMART REC_2 32 144 IPR001789 GO:0000160
Trre15g04887 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 384 IPR045279 GO:0009736
Trre15g04887 677 FunFam Two-component response regulator 32 169 - -
Trre15g04887 677 MobiDBLite consensus disorder prediction 152 210 - -
Trre15g04887 677 CDD REC_typeB_ARR-like 34 148 - -
Trre15g04887 677 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Trre15g04887 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Trre15g04887 677 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04887 677 MobiDBLite consensus disorder prediction 188 210 - -
Trre15g04887 677 FunFam Two-component response regulator 208 271 - -
Trre15g04887 677 MobiDBLite consensus disorder prediction 573 592 - -
Trre15g04887 677 SUPERFAMILY CheY-like 31 153 IPR011006 -
Trre15g04887 677 MobiDBLite consensus disorder prediction 152 176 - -
Trre15g04887 677 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04887 Trre-Chr15 58994446 58997969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04887 67 677 Response Regulator Gene Family AT3G16857 50.460 3.25e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre15g04887 Response_reg 5.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04887 - K14491 gmx:100814930 1103.97