Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g04887 | ATGAATCTTAGCAACGGTAAAGGATCCATTTCTACTGTTACTTCAACTGCTACTATGAAATCCGGTGAAGGTTCCGACCAGTTTCCGGCGGGTTTACGAGTTCTTGTTGTTGATGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGTTACGCACGTGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAGACTGCACTTTCGCTCCTAAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCTGACATGGATGGATTTAAACTGTTAGAACACATTGGATTGGAAATGGACCTTCCGGTTATTATGATGTCTGCGGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACACGGTGCTTGCGATTATCTAATTAAACCTGTTCGTATTGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGAAAGAAAAAGAACGAGTGGAAAGATACAGAGCAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCCGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGAGGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTAGCTGCTGTCGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGCCTCACTCGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGGTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACAATAACTTGAACAACTCATTTCTCAGCCCACAAGAGGCATCATTTGGTACAATTTCACCAATGAACGGTCTTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCTGCCGGACTAGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCGAGGTTGAGATTTGGAGGAGGGCAACAACAACTTTTGAGCAGCAGTAAACCAACAAATCTTCTTCATGGGGTTCCTACTAACATGGAGCCAAAGCAGCTCGCAAATTTGCACCAATCTGCACAATCCCTCGGCAATTTGAATATGCGAGCCACTGGTTCTGCTACGCAGGGTAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATATCAGTCCTCGTGTTCCGAGACTTCCGAACATCTTGGGGCAGCCCACTTTGTCAAACGGAATTTCTGATGGTCTTTTAGGGAGAAATGGCATAGCTAGTAGCAGCAGAGGTCCTTCATTTAATCCTGCTTCACAGAGCTCTTCATATTTGAATTTTCCCATGAATCAAAGCACCGAAATGTCTGTTAGTAATTTCCCTCTCGGAAGCACCCCGGCGGGTATATCAAGTATGTCAACCAAAGGCTTGTTTCAACCGGAAGTTAATTCGGGAATAAGAGCATCTGCTGGTTTTCCAAACTACGATATTTTTAATGACCTGAACCATCAGAAGCCCCGGGATTGGGGGATGGCAAGCCAAGGTCCAATGTATGATTCATCATCACATGCAAATCCTTTGCATGGTAACATTGATGTCTCTCCATCAGTTTTAGTCCAACAAGGTTATTCTTCTACTCAACAACCTGGACATAGCAGAGATGCCTCTTTGATGGGAAAATCTCCTTTCTCTCTCGGCGAAGGCTTGGAACACAGTAATCTCCAAAATGGCGGTCAACACTTCAATCCCCTTCTTGCTGGAAATTCAACAAGGGTCAAGTCTGAAAGCGTTCCCGACGCGAGCTCCCAGACTAACCTCTTCCCTGATCATTACGGGCAGGACGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGTCATTGGACAAGGCGAGAACGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG | 2034 | 0.444 | MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEDGEDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHNNLNNSFLSPQEASFGTISPMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSFENPRLRFGGGQQQLLSSSKPTNLLHGVPTNMEPKQLANLHQSAQSLGNLNMRATGSATQGNPLLMQMAQSQPRGQMLSENISPRVPRLPNILGQPTLSNGISDGLLGRNGIASSSRGPSFNPASQSSSYLNFPMNQSTEMSVSNFPLGSTPAGISSMSTKGLFQPEVNSGIRASAGFPNYDIFNDLNHQKPRDWGMASQGPMYDSSSHANPLHGNIDVSPSVLVQQGYSSTQQPGHSRDASLMGKSPFSLGEGLEHSNLQNGGQHFNPLLAGNSTRVKSESVPDASSQTNLFPDHYGQDDLMSALLKQQEVIGQGENEFDFDGYSLDNIPV | 677 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g04887 | 677 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 212 | 265 | IPR006447 | GO:0003677 | |
Trre15g04887 | 677 | PIRSF | RR_ARR_type-B | 14 | 669 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Trre15g04887 | 677 | Gene3D | - | 32 | 203 | - | - | |
Trre15g04887 | 677 | Pfam | Myb-like DNA-binding domain | 214 | 264 | IPR001005 | - | |
Trre15g04887 | 677 | Gene3D | - | 209 | 271 | - | - | |
Trre15g04887 | 677 | ProSiteProfiles | Response regulatory domain profile. | 33 | 148 | IPR001789 | GO:0000160 | |
Trre15g04887 | 677 | SMART | REC_2 | 32 | 144 | IPR001789 | GO:0000160 | |
Trre15g04887 | 677 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 32 | 384 | IPR045279 | GO:0009736 | |
Trre15g04887 | 677 | FunFam | Two-component response regulator | 32 | 169 | - | - | |
Trre15g04887 | 677 | MobiDBLite | consensus disorder prediction | 152 | 210 | - | - | |
Trre15g04887 | 677 | CDD | REC_typeB_ARR-like | 34 | 148 | - | - | |
Trre15g04887 | 677 | Pfam | Response regulator receiver domain | 34 | 142 | IPR001789 | GO:0000160 | |
Trre15g04887 | 677 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 211 | 268 | IPR017930 | - | |
Trre15g04887 | 677 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Trre15g04887 | 677 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - | |
Trre15g04887 | 677 | FunFam | Two-component response regulator | 208 | 271 | - | - | |
Trre15g04887 | 677 | MobiDBLite | consensus disorder prediction | 573 | 592 | - | - | |
Trre15g04887 | 677 | SUPERFAMILY | CheY-like | 31 | 153 | IPR011006 | - | |
Trre15g04887 | 677 | MobiDBLite | consensus disorder prediction | 152 | 176 | - | - | |
Trre15g04887 | 677 | SUPERFAMILY | Homeodomain-like | 209 | 269 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g04887 | Trre-Chr15 | 58994446 | 58997969 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g04887 | 67 | 677 | Response Regulator Gene Family | AT3G16857 | 50.460 | 3.25e-174 | 509 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Trre15g04887 | Response_reg | 5.6e-23 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g04887 | - | K14491 | gmx:100814930 | 1103.97 |