Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04874 ATGGGACAAGAATCAGATTCCAAATCCAAATTGGTGATAGAAATTTGCTCCATTTCAACACGTTCTGCATCTTGTGTTCATAGGATTCTTTCAAACCCAACAAAAACAACTTTCATTGACTGGTATTGCATTCTTGGAGTAGAAGAAAATGCAGGTGTAAATCTCATTCGTAAGAGATACCATAAACTTGCATTGCAACTTCACCCAGATAAGAACAAACATCCAAAAGCTGAAATTGCCTTCAAACTTGTTTCTGAGGCAAATGCATGTCTAACAAATGTAGCAAAAAGAGAAGCTTTCGATTTCGAGAGGTACAAGCATTTCTGCATTGAGTGCAAAAAAATTCCATATACAACATCAGGCAATGTTTCTGTCAATTCTGGTGGTTCAGGTTTCAAGGCATGGAATATTATCACGAAATCGCGATCTTTTAAGTTTTGGAGAAATATTAAGGATGTTAGAGAGAGATTTAATGAAGAGGCTAAGGTGATTGAGAATTGTTTAAGAGTAAATTCAATGTCAAGGAAAGAATCTCCACTCTACAATCCAGCTAGTTATCTACATAGGAGCAAGTCGATGCATAGATTTGAGAAAGAAACGCCTGTTTTCAATCCGTCGGATTATTTGTACCAAGGCTATCCTCATATGAGAGGTCTTGGTAACAAGAATTCTTCCACATTTATGTACTTGCAGACAGCTAGTATACTGCAGAATGAAAAGCGAGGAGCGCAACATAGCTCGCCTGTTTTTGAGGTCAAAACGCGGAGTATGTTTACAAACCAATTTGCTTTTGTATCATCAAGATATTAA 810 0.3704 MGQESDSKSKLVIEICSISTRSASCVHRILSNPTKTTFIDWYCILGVEENAGVNLIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEANACLTNVAKREAFDFERYKHFCIECKKIPYTTSGNVSVNSGGSGFKAWNIITKSRSFKFWRNIKDVRERFNEEAKVIENCLRVNSMSRKESPLYNPASYLHRSKSMHRFEKETPVFNPSDYLYQGYPHMRGLGNKNSSTFMYLQTASILQNEKRGAQHSSPVFEVKTRSMFTNQFAFVSSRY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04874 269 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Trre15g04874 269 PRINTS DnaJ domain signature 60 75 IPR001623 -
Trre15g04874 269 PRINTS DnaJ domain signature 76 96 IPR001623 -
Trre15g04874 269 PRINTS DnaJ domain signature 42 60 IPR001623 -
Trre15g04874 269 PRINTS DnaJ domain signature 113 132 IPR001623 -
Trre15g04874 269 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Trre15g04874 269 Gene3D DnaJ domain 39 162 IPR036869 -
Trre15g04874 269 CDD DnaJ 40 87 IPR001623 -
Trre15g04874 269 SMART dnaj_3 39 96 IPR001623 -
Trre15g04874 269 SUPERFAMILY Chaperone J-domain 30 104 IPR036869 -
Trre15g04874 269 PANTHER BNAC03G44070D PROTEIN 21 173 - -
Trre15g04874 269 Pfam DnaJ domain 40 101 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04874 Trre-Chr15 58872923 58874144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04874 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 1.76e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04874 - - gmx:100801809 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04874 15 58872923 58874144 Trre15g04874 15 58872923 58874144 ECH
Trre15g04874 15 58872923 58874144 Trre3g01655 3 13264675 13270474 PCT