Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04872 ATGGTTCATTTTCCATCTTTTGTAAACGGATTGGCAAGAACAATATCAATCAAGAAAGAGAAGAATTTTCAAAAGGATGATGCAAGAAAAGCTGTGGAAGAATTGGCAAAAGAAGCAAGAAAGAATGAATTGTTTTTGAGTTCCTCTGGAGTTGTTAGGTCCAACAAGGACAACAATTTTGTTTCTGTTTTTACACATAGAGGCCAAAAAGGAGTCAACCAAGATCGTCTCGTTGTTTGGGAGGAATTTGGATGCCAACAAGACATGATGTTTTGTGGAGTTTTTGATGGGCATGGTCCTTGGGGACATTTTGTAGCTAAAAGGGTAAGGAAATTAGTACCAGCCCTTTTGCTATCCAATTGGCAAGAAAATCTTGCTGCAAAATCAATTGACCTAAATTTTAAGATGGAAGAGGACAAAAATGTTCATGGATTGGACCTATGGAAAAAGTCCTACATAAAGGCTTTTGCTGCTGCTGACCAAGATTTGAAGCAGCACACCGGAATTGATTCATTTAATAGTGGTACTACAGCTTTGACACTTATCAAACAGGGTGAAAACCTTATTATAGCAAATGTGGGTGATTCAAGACTTGTGTTGGCAACAACTTCAGAAGATGGCACATTATTTCCACTTCAGCTTACCACTGACTTCAAACCAAATTTACCAAAGGAAGCGGAACGTATAAAAGAATCAAAAGGACGTGTATTTTGTATGAAAGATGAACCAGGGGTATACAGAGTTTGGATGCCAAACTGTAAAACACCAGGATTAGCAATATCTAGAGCATTTGGTGATTATTGTATGAAAGACTATGGTCTAATTTCTGTGCCAGATGTGACATATAGAAAACTTACAACTATGGATCAATTTATCATCTTAGCTTCAGATGGGGTGTGGGATGTTGTTTCAAACCAAGAGGCAGTGAAAATTGTTTCTACAGCACCAAATAAGGAAAAAGCAAGTGAAAGGCTTGTGAAGTATGCTATGCTTGAATGGAAAAGAAAGAGAAGTGGTATTGCTATGGATGATATGTCAGTAATTTGCCTCTTCTTTAATCAAATGCAAGCAACTAAAGTTGTTGATTAA 1089 0.3719 MVHFPSFVNGLARTISIKKEKNFQKDDARKAVEELAKEARKNELFLSSSGVVRSNKDNNFVSVFTHRGQKGVNQDRLVVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPALLLSNWQENLAAKSIDLNFKMEEDKNVHGLDLWKKSYIKAFAAADQDLKQHTGIDSFNSGTTALTLIKQGENLIIANVGDSRLVLATTSEDGTLFPLQLTTDFKPNLPKEAERIKESKGRVFCMKDEPGVYRVWMPNCKTPGLAISRAFGDYCMKDYGLISVPDVTYRKLTTMDQFIILASDGVWDVVSNQEAVKIVSTAPNKEKASERLVKYAMLEWKRKRSGIAMDDMSVICLFFNQMQATKVVD 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04872 362 FunFam Probable protein phosphatase 2C 34 51 354 - -
Trre15g04872 362 Gene3D - 47 355 IPR036457 -
Trre15g04872 362 Pfam Protein phosphatase 2C 84 330 IPR001932 -
Trre15g04872 362 SMART PP2C_4 51 350 IPR001932 -
Trre15g04872 362 Coils Coil 18 38 - -
Trre15g04872 362 CDD PP2Cc 59 352 IPR001932 -
Trre15g04872 362 PANTHER PROTEIN PHOSPHATASE 47 350 IPR015655 GO:0004722|GO:0006470
Trre15g04872 362 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Trre15g04872 362 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04872 Trre-Chr15 58856541 58858743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04872 1 353 PP2C-type Phosphatase Gene Family AT3G05640 58.310 1.90e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04872 - - gmx:100814087 601.668