Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04868 ATGAATTCCAATTACGGAAAACCCAACCCTAAAAAATCATCCTCTGTTTCTCTCAACAACTTCAATTTCGATCTTGATCTTGGAATCGGATCCAATCGATCCAAATCCCTAAAAGATCAGAAAAACCCCAATCCTTCCTATTCCAATTCGTATTCAACTCCTTCATATTCATCGGCGCAACCCAAAAAAACCACATGGACCCATCAACCCACTCAAACTCCGGCTGGATTACCTGGTGCACCGCCGTCGATGGTTGGTGACATCTTCGGAAAAAGTTGGGGATCTACTCAACCGTCTGGTCCTAGCATTGGAATTGTTAATAAAAACCCTAATTTATTTGGGGATTTGGTAACCTCTGCTTTGGGACAAGGTTCTTCTTCTTCTTCTTCAAATGTTCCTCTGAAAAATGCAACTCCAAAACCTAATAAATCCTCTTTTTCAATGTCAAATATGGCTGATTCTTTGCCTAAACCAGTTAATACAACACAGAGTGGTTCTACTTGGGGATCATCTTCTGGGAATTTTAATTTGAATGCTAATAAAACTCCCAATCTTGGTGGTCCTTCGATTCGAAGTGGCGTCGGTGTTGCTGCATCTGGTAGTGGAATTGGAACTAGTAATAAAGATCCTTTTAGTTCATTGGCTGGTTTTGGATCTAAGCAACAATCTAGTCTTAATTCAGCTGCTAAACCTCAAAAAATTGATTTAGAAGATGATGGTTTTGGAGATTTTCAAAATGCTTCGAAACCGAGCTCTAATGCATTTCCATCAAGTGGTGGTGGTAGTTCTGGAATTGATTTTGATTTTTCTGGATCGTCCGCTACAAATAAGACACCGGTTCAAGCTTCTTCGGGTGGTGGTGGTGGTGATCCAATGGATATGTTTTTCACATCTTCAAGTGCCTCATCTGGAGGTGGTAGTGCTGCGCCTGCGGCAGCGGCGTCTTCTGAAATTGATGATTGGGGTACTGAGTTTGGAGGTAGAAACCATGATGTGGGTGGAACAACTACCGAGCTTGATGGGCTTCCACCTCCTCCTGCTGGGATATCAGGTTCTGCTGCTAAAAGCAAAGGCATGGATAATTACAAGCAGGGGCAATTTGCTGATGCTATTAAGTGGCTTTCATGGGCTCTCATCATTTTAGAGAAAGCTGGTGATGGTGCTGGCACGACGGAGGTTTTGTCATGCAGAGCTTCTTGTTACAAAGAAGTTGGAGAGTATAAAAAAGCGGTGGCGGATTGTACTAAGGTTATTGGAAACGATGGAAAAAATGTATCTGTCCTTGTTCAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGAACTGTGCTGAAGATTGATCCTACTAATAGGGTTGCTAGAGGTACTGTTCACCGGTTGGCTAAGATGGCTGAATAG 1422 0.4269 MNSNYGKPNPKKSSSVSLNNFNFDLDLGIGSNRSKSLKDQKNPNPSYSNSYSTPSYSSAQPKKTTWTHQPTQTPAGLPGAPPSMVGDIFGKSWGSTQPSGPSIGIVNKNPNLFGDLVTSALGQGSSSSSSNVPLKNATPKPNKSSFSMSNMADSLPKPVNTTQSGSTWGSSSGNFNLNANKTPNLGGPSIRSGVGVAASGSGIGTSNKDPFSSLAGFGSKQQSSLNSAAKPQKIDLEDDGFGDFQNASKPSSNAFPSSGGGSSGIDFDFSGSSATNKTPVQASSGGGGGDPMDMFFTSSSASSGGGSAAPAAAASSEIDDWGTEFGGRNHDVGGTTTELDGLPPPPAGISGSAAKSKGMDNYKQGQFADAIKWLSWALIILEKAGDGAGTTEVLSCRASCYKEVGEYKKAVADCTKVIGNDGKNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPTNRVARGTVHRLAKMAE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04868 473 MobiDBLite consensus disorder prediction 235 301 - -
Trre15g04868 473 Pfam Tetratricopeptide repeat 426 458 IPR019734 GO:0005515
Trre15g04868 473 Gene3D Tetratricopeptide repeat domain 351 472 IPR011990 GO:0005515
Trre15g04868 473 MobiDBLite consensus disorder prediction 245 283 - -
Trre15g04868 473 SMART tpr_5 351 384 IPR019734 GO:0005515
Trre15g04868 473 SMART tpr_5 425 458 IPR019734 GO:0005515
Trre15g04868 473 SMART tpr_5 391 424 IPR019734 GO:0005515
Trre15g04868 473 MobiDBLite consensus disorder prediction 121 187 - -
Trre15g04868 473 MobiDBLite consensus disorder prediction 29 102 - -
Trre15g04868 473 SUPERFAMILY TPR-like 353 462 IPR011990 GO:0005515
Trre15g04868 473 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Trre15g04868 473 PANTHER OS03G0340700 PROTEIN 1 473 - -
Trre15g04868 473 MobiDBLite consensus disorder prediction 121 188 - -
Trre15g04868 473 MobiDBLite consensus disorder prediction 29 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04868 Trre-Chr15 58838855 58841640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04868 350 473 Calmodulin-binding Proteins AT3G25230 28.889 1.34e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04868 - - pvu:PHAVU_003G107800g 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04868 15 58838855 58841640 Trre15g04868 15 58838855 58841640 ECH