Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04865 ATGGCAAATAGACTTTTGTTTACCGACCATACTGAAATTGGATTGTTTTGTAACCTTACGAATGCCTATTGTTTGGTTGGCACTGGAGGTTCCGAAAACTTCTACAGTTCAATTGAGGCTGAATTAGAAGATACTATCCCTATCATCAAAACCTCCATTGGTGGCACCCCTTGTGTTGGTCGTTTTTGTATTGGAAATAAAAAAGGGCTTCTCTTGCCCCATACAACCACAGACGAAGAATTGCTACATATAAGAAGAAATCTGCCTGATGGAGTTTTTCCTGCTATCATTGAAGAAGGGATGACTTCTTATGGACTGTTTATAGCTTGTAATGACAATGTGGCCCTCGCTCACGCTGATCTTCGCCCGGAATTTAAGGAGTTGATCACAGATGTCCTTGGGGTAGAAGTTTTCATGCCGGAAGATTCTTATAGTTTTTTTTCTGGAACTTACTGTGCTTTGTCCAACATAGGTGGTTTGATCTACCGTGGTGCTTCCGATAAAGTCTTGGATGAACTTTCTGCAGCTCTTGAAGTTCCTTTGGAACGTGGGACTGTCAATCGGGACAGCATTGTTCTAGCTTCTGGCATGACAGTAAATGATTGGACAGGCTTTTGTGGTTCAAGCACCACAAGAGCAGAGCTCCGTGTGATTGATAGAGTTTTCAAGCTGAGGGATCCCTAA 684 0.4254 MANRLLFTDHTEIGLFCNLTNAYCLVGTGGSENFYSSIEAELEDTIPIIKTSIGGTPCVGRFCIGNKKGLLLPHTTTDEELLHIRRNLPDGVFPAIIEEGMTSYGLFIACNDNVALAHADLRPEFKELITDVLGVEVFMPEDSYSFFSGTYCALSNIGGLIYRGASDKVLDELSAALEVPLERGTVNRDSIVLASGMTVNDWTGFCGSSTTRAELRVIDRVFKLRDP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04865 227 NCBIfam translation initiation factor IF-6 6 223 IPR002769 GO:0042256|GO:0043022
Trre15g04865 227 Gene3D - 1 225 - -
Trre15g04865 227 SUPERFAMILY Pentein 1 224 - -
Trre15g04865 227 Hamap Translation initiation factor 6 [eif6]. 1 227 IPR002769 GO:0042256|GO:0043022
Trre15g04865 227 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 IPR002769 GO:0042256|GO:0043022
Trre15g04865 227 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Trre15g04865 227 Pfam eIF-6 family 5 203 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04865 Trre-Chr15 58820501 58823597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04865 1 226 Eukaryotic Initiation Factors Gene Family AT3G55620 60.177 7.10e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04865 K03264 - thj:104824299 275.018