Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04862 ATGGCAGGAGGAGGAGCAATAGAAAACAAAAACCATGACTCAAAGAAGAAGTTCGCCGTTCTCGGCGTATCTTCTATCTTACTTATCGCCATGGTTGCTGCGGTGGCCGTAGGTATATCTACCGACAACACTGCCGGAGAATCAGGAGGTGACAAACAAATTGTAAAATCACAAAAAAATGTACAGATAATCTGTGATGCAGCAGAGTACAAGAAAACCTGCGAGAAGAGTCTTGAAAAAGCTTCAACAGAAACCAATGACATGAAGCAATTGATCATAGCTGCATTCAATGCAACTGCTGATGAACTCACCAAACAGATTAATAACTCAACACTTTACCATGAATTAGCTACCAATGACATGACAAAACAAGCTATGGAAATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCAGTTCATACATTGGATAAATTTGAGCTAAGTAAGCTAGATGAATATGCTTATGATCTTAAGGTTTGGCTCGCCGGTACAATTACTCATCAACAAACATGTTTAGATGGATTTGAAAACACAACTACTCATGCAGGACAAACCATGGCTAAAGTTCTTAACACATCTTTGGAGCTAAGTAGCAATGCTTTTGATATAATTAATGGAGTTGCAGATTTCATGAAAAGTCTTAACTTGAGTTCTCTTACAAGTTCAATGAATCATAGAAAACTTTTGTCTGAAGATGGTTTTCCAACATGGGCTAGTGAAACTCAAAGGAAACTTCTTGTAGCACCTGAAAGCATTAAGCCTAATGTTGTTGTTGCTCAAGATGGTAGTGGACAGTTTAAGACTTTGACTGAGGCACTTGCACTTGTTCCTACTAAGAACAAGGCTCCTTTTGTTATTCATGTTAAGGCTGGTGTCTATAATGAGTATGTTACTTTGGATAAACATAGGGACCATGTTACTATTATTGGTGATGGTCCTCTTAAGACCAGATTTACCGGCAACAAAAACTATGTTGATGGTGTTCAGACTTACATGACTTCAACATTCAGTGTGAACTCTGCTCATTTTATGGCTATCAACGTCGGATTCGAGAACTCAGCAGGAGCAGAGAAGCATCAAGCAGTAGCACTCCGTGTAACAGCAGACAAAGCAATTTTCTACAACTGTCACATGGACGGTTTCCAAGACACACTTTATGTACAATCAAAAAGACAATTCTACCGTGACTGTACCGTGACAGGAACAATCGACTTTGTCTTCGGTGATGCTGTTGGAGTTTTCCAAAACTGCAAGTTCATTGTCAAGAAGCCATTGGATGATCAACAATGCATGGTAACAGCAGGCGGAAGAACTAAAGTCGACAGTCCATCCGCCCTTGTTTTCCAAAACTGTCATTTCACCGGTGAACCAGATGTAGCTACCTTGGACCCCAAGATAGCTTATTTGGGTAGACCATGGAGAAATTTCTCAAAGGTTGTTATCATGGATTCTAACATTGACGGTATCTTCTTACCAGAAGGTTATATGCCATGGATGGGAGCCGCTTTCGAAGACACATGTACTTATTACGAATACAACAATGTCGGTGCCGGTGCTAACACTGCAGGAAGAGTGAAGTGGCCAGGTTTTAAAGTCCTTGCTGCCCCTGAAGCTGCTGATTACTATCCAGGAAAGTTTTTTGAACTTGCTAACTCAACTCAGCGTGATTCTTGGATTGTTGAAGCTGGAATTCCTTATGCAATTGGACCACAACCAGCTGGATTACTTACACCTCCACCACAATAA 1761 0.4049 MAGGGAIENKNHDSKKKFAVLGVSSILLIAMVAAVAVGISTDNTAGESGGDKQIVKSQKNVQIICDAAEYKKTCEKSLEKASTETNDMKQLIIAAFNATADELTKQINNSTLYHELATNDMTKQAMEICKEVLGYAVDDVHQSVHTLDKFELSKLDEYAYDLKVWLAGTITHQQTCLDGFENTTTHAGQTMAKVLNTSLELSSNAFDIINGVADFMKSLNLSSLTSSMNHRKLLSEDGFPTWASETQRKLLVAPESIKPNVVVAQDGSGQFKTLTEALALVPTKNKAPFVIHVKAGVYNEYVTLDKHRDHVTIIGDGPLKTRFTGNKNYVDGVQTYMTSTFSVNSAHFMAINVGFENSAGAEKHQAVALRVTADKAIFYNCHMDGFQDTLYVQSKRQFYRDCTVTGTIDFVFGDAVGVFQNCKFIVKKPLDDQQCMVTAGGRTKVDSPSALVFQNCHFTGEPDVATLDPKIAYLGRPWRNFSKVVIMDSNIDGIFLPEGYMPWMGAAFEDTCTYYEYNNVGAGANTAGRVKWPGFKVLAAPEAADYYPGKFFELANSTQRDSWIVEAGIPYAIGPQPAGLLTPPPQ 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04862 586 SMART PMEI_2 56 208 IPR006501 GO:0004857
Trre15g04862 586 FunFam Pectinesterase 57 213 - -
Trre15g04862 586 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Trre15g04862 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
Trre15g04862 586 Pfam Plant invertase/pectin methylesterase inhibitor 61 207 IPR006501 GO:0004857
Trre15g04862 586 Gene3D - 257 575 IPR012334 -
Trre15g04862 586 NCBIfam pectinesterase inhibitor domain 55 211 IPR006501 GO:0004857
Trre15g04862 586 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Trre15g04862 586 FunFam Pectinesterase 4 257 575 - -
Trre15g04862 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 210 IPR035513 -
Trre15g04862 586 CDD PMEI-like_3 64 213 - -
Trre15g04862 586 SUPERFAMILY Pectin lyase-like 257 552 IPR011050 -
Trre15g04862 586 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Trre15g04862 586 PANTHER PECTINESTERASE 27 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04862 Trre-Chr15 58798175 58800131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04862 15 584 Carbohydrate Esterase AT3G05610 44.367 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04862 K01051 - gmx:100800194 845.884