Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04861 ATGGATTCGAGCATGAAGAGCGAAAGTGAAACCGAAAACAACTATGCTGCTAGCGGCAAAATAATGCTAACAGCCACTATCATTCTCTTCGTCATTATCATCATAATACTCTGTTTTCATCTCTTAATTCGATGGTACCTTCTTCGTTCTGTTAACCGTCAACAACACCGCCGTAACCGTAACCGTCAAGTTCAACGTCAACCGTTTGTTTTCTACGTTGATCCTTCCGCTCCTGCTTCATTGATCCTCGCCGTTTCTCGTGGACTCGATGCCTCTGTTATTTCTTCACTCCCGGTGTTTAAGTTTTGTCCTGAGACTCATCCTGAGGGAGTGGAATGCGCGGTTTGTTTGTCGGAGTTTGAAGAAGGGGAAACGGGTCGGGTTTTGCCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACTTGTCCGCTTTGTAGAGCACCCGTGGAGCCTGCTCCGGTTCAATTGACCCGGTCCGATGTGGTGATTGATGTGAGTGAACTGGAATTGGTTTTGGATTCGAGTTCTGAGGAAGAAATGAACCGGTCTGAACTGGGATTTTCTTCTTCGTCAAGTTCGAAGCAATCTTCTTATGTTGGCGTTACAGTTGGAAGAAGCGAAAGCGATTCCGAGAGGTTCGTCGCCGGCGAGTCGAGTTCATCGACGTCATTTCGGTCGCCGATGAGTCGCGTGTTGTCGTTTACCAGAATGCTTAGTAGAGAGAGGAAACCGAGTGTTTCTGCTTCGTCAGATTGTGTCTCTGTGACAGAGTTGGATGCAGAACGAGGTGGAAGGGAGGTGACTCAGTGA 837 0.4648 MDSSMKSESETENNYAASGKIMLTATIILFVIIIIILCFHLLIRWYLLRSVNRQQHRRNRNRQVQRQPFVFYVDPSAPASLILAVSRGLDASVISSLPVFKFCPETHPEGVECAVCLSEFEEGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEPAPVQLTRSDVVIDVSELELVLDSSSEEEMNRSELGFSSSSSSKQSSYVGVTVGRSESDSERFVAGESSSSTSFRSPMSRVLSFTRMLSRERKPSVSASSDCVSVTELDAERGGREVTQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04861 278 CDD RING-H2_EL5-like 112 155 - -
Trre15g04861 278 MobiDBLite consensus disorder prediction 218 237 - -
Trre15g04861 278 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 161 IPR044675 -
Trre15g04861 278 SUPERFAMILY RING/U-box 93 161 - -
Trre15g04861 278 MobiDBLite consensus disorder prediction 249 263 - -
Trre15g04861 278 MobiDBLite consensus disorder prediction 190 210 - -
Trre15g04861 278 MobiDBLite consensus disorder prediction 222 237 - -
Trre15g04861 278 SMART ring_2 113 154 IPR001841 -
Trre15g04861 278 MobiDBLite consensus disorder prediction 249 278 - -
Trre15g04861 278 Pfam Ring finger domain 112 155 IPR001841 -
Trre15g04861 278 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Trre15g04861 278 FunFam RING-H2 finger protein ATL3 81 160 - -
Trre15g04861 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04861 Trre-Chr15 58796046 58796882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04861 13 275 Rapid Response to Elicitors AT3G16720 49.123 2.73e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04861 - - gmx:100791545 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04861 15 58796046 58796882 Trre15g04861 15 58796046 58796882 ECH
Trre15g04861 15 58796046 58796882 Trre3g01686 3 13586309 13587208 PCT