Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04842 ATGGAGAACCCTCAATATCCAAACAACAACAACAACAACAACAACCCTCCTTCTTCACCCTATCAACACCAACGCTCCGCTTACATTCCCAAACCACAATCTCACCATTCCGATAATAATGATCCAACCACCGCTGAGTTACGTGCTCTCGATTGTAACCTCGCTTCTCTCTGCGAACATGTTCAAATTGAAGGTTTCACTTCTGGCTCTTTTTCCGATATCGTTGTTAATGCCATGGGTTCCACTTATCATCTTCACCGTCTCATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGTCCATGGAAAGAAGCCAGTGCTGCTATTGTGACCCTGCAAATTGATGATAACAATGTTAATGACGAAGCTATTGCAATTGCTTTGGCATATCTATATGGAAACCACCCTAAACTTAACGATAATAATGCGTTTCGTGTTCTTGCTGCCGCTTCCTTTCTCGACCTTCAGGATTTATGTGCTATATGTACAGATTTCATAATATCTGAGCTATGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGATTACGGCATTCATGGGGAGCGTGTTAGAACTGCTTGTTGGGGCTACCTTTGTCAAAGTGGGGGCATGGAATTGAGAGAGGTGCTTCCTAAACTTTCATCTCATACGTTACATGCATTACTGACCTCTAATGATCTGTGGATATCCTGCGAAGAGAAGCGGTTTGAATTGGCTTTGCACACATTCCTGGCAAAAAGTGCTCACTGCAAGATTGAACATCCTGCACATGGAATTCCTGATTCTGAATCTGCAACTGGCATTCGTTCTGATTCTGATAACACCAAGGGTAAAGGTATCATTGATAGCTGCACAAACGAGAGGTTGGAAACTGACTTGGGGAAAATGAGTCTTAAAAGTGATCTAAAGGTCCCTAGCATGCCTAATCTTTTAGTCGAGTTTGCAAACTCAGCAGTAGACTTCAACAATGCCATTTCTGATTCTAATCAACGGGTTCAACTTGCTTCATATGTCAGTTCACCAAACTTGAATCCAAGATATCCTTGTGACATGGAAGGAACTTCATTGGGCAATTCATTGTCTGATACAGATGGGGCGAGAACATCTTGTTATGTTGAGGTGCCTCTTGGTGCTGGAACAATTACTGGAGTGAGTATTGAAGGACCATCTGAGGAAGGATCTTGCTACCATTCGGATAACAACAATAGGTTGGTCAGGGATCAATCAAGACATTGTTTTTCATCGAGTTCTTCTAATGGGCCCACATCCAGTGATTGGGGAAGATATGGAACACCTTCACTTTCATGGGGTGGCCATGTTGGCAGAAGACAAGTCAAACCTCATCCCAGAGGAAACTATGTAGATGAAGACGATGTATTTCTTAATATATTTGAAGGGGGCTCACTTTTATATTGCAATATGTCTTTTGATGCACTTTTAAATGTCAGAAAGCAGCTTGAAGAAATAGGATTCCCATGCAAAGCTGTAAATGATGGTCTGTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAGATTGCTGCTGATACATGCAGAGTTTGTTCACTTATGACTATGTCTTGTACTTGCCAAAAGCAGTTTGCATTTTTACATGGATCTACTACCACTGGATCTTACATGCAAGAACATAATCATAACAATATGCCTGGGGGTGGAGGAAATATATATGTTGCTGAATCTTCTACAGGAGAAAGAAACGGCTCTTTTAGACCTGTACGAGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTACATTTGTTCCTGCAGCGGCTTCTCCTCCTACACGATTTGTCTTTTCTCGTGTACCATTTGGCGTTGGCAACAGAAACTACCCTCAATCTGCCGCCAATGATGATTCAGAGGCACGTGCTGATCACAATGGAGACTTGTCTGGAGATGGATTGACAGCTTTAGTTGGGCTAAGCCAGGGAGGGAATTATGGAACAAATGTAAATACAGAGCTAACACAAAGGGGACATGAAATGGGTATGCAAAGTACTGCTGGCGGTGCAAGTACTGGTGGCATTCCCGTACAGATGTTAGAGACACCAGAACATACCGTTGGTATAGAATGGGAGAATGACAACAGCTCTTCTATATCATTGGATTTGAAAACACCTCTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTAAGTTTTGAGGAAGTGCACAGGCTTGGTGATGGCCAGGTCAAGCATTCACCAGAAGTTTTCTATGCTGGTTCTTTATGGAAGGTCAGTATTCAGGCTTTTAATGATGAAGACCCCCAGGGACGGCGTACCCTTGGGTTGTTTCTTCACCGGCGGAAGGCAGAGATAACTGATGTACACAGGAAGGTACATATGTATGTTGACTCACGTGAAAAGGTCACTGCACGGTATCAGTTGACTTGCCCATCCAAGAGAGAAATGTTGGTGTTTGGAAGCTTTAAACAAACGGGCACTCTTCTACCCAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTGCTATTTGATGAACTTGCTGATCTTCTCCAAAACGGGGCCCTAAGGGTTATCGCTGTAGTGCAGCTTGTTTGA 2619 0.4357 MENPQYPNNNNNNNNPPSSPYQHQRSAYIPKPQSHHSDNNDPTTAELRALDCNLASLCEHVQIEGFTSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAAIVTLQIDDNNVNDEAIAIALAYLYGNHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELREVLPKLSSHTLHALLTSNDLWISCEEKRFELALHTFLAKSAHCKIEHPAHGIPDSESATGIRSDSDNTKGKGIIDSCTNERLETDLGKMSLKSDLKVPSMPNLLVEFANSAVDFNNAISDSNQRVQLASYVSSPNLNPRYPCDMEGTSLGNSLSDTDGARTSCYVEVPLGAGTITGVSIEGPSEEGSCYHSDNNNRLVRDQSRHCFSSSSSNGPTSSDWGRYGTPSLSWGGHVGRRQVKPHPRGNYVDEDDVFLNIFEGGSLLYCNMSFDALLNVRKQLEEIGFPCKAVNDGLWLQMLLSQRVQEIAADTCRVCSLMTMSCTCQKQFAFLHGSTTTGSYMQEHNHNNMPGGGGNIYVAESSTGERNGSFRPVRVHVRGAIDGLAGIGRGTTFVPAAASPPTRFVFSRVPFGVGNRNYPQSAANDDSEARADHNGDLSGDGLTALVGLSQGGNYGTNVNTELTQRGHEMGMQSTAGGASTGGIPVQMLETPEHTVGIEWENDNSSSISLDLKTPLSHFPPFRFGVSFEEVHRLGDGQVKHSPEVFYAGSLWKVSIQAFNDEDPQGRRTLGLFLHRRKAEITDVHRKVHMYVDSREKVTARYQLTCPSKREMLVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04842 872 MobiDBLite consensus disorder prediction 630 650 - -
Trre15g04842 872 SUPERFAMILY POZ domain 66 170 IPR011333 -
Trre15g04842 872 Gene3D Potassium Channel Kv1.1; Chain A 44 205 IPR011333 -
Trre15g04842 872 Pfam BTB/POZ domain 67 170 IPR000210 GO:0005515
Trre15g04842 872 MobiDBLite consensus disorder prediction 1 44 - -
Trre15g04842 872 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 7 872 - -
Trre15g04842 872 SMART BTB_4 72 172 IPR000210 GO:0005515
Trre15g04842 872 ProSiteProfiles BTB domain profile. 72 142 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04842 Trre-Chr15 58648609 58653711 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre15g04842 BTB 2.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04842 - - tpra:123882109 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04842 15 58648609 58653711 Trre15g04842 15 58648609 58653711 ECH