Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04839 ATGGCGGATTCATTATGGCAAAATTGGAAGAATCGAGACTTTACTCTTGCTTCGGTTTCCGACCTCTCTGACTCTTCCGATGCTTCATCGCCGGGAATTGCTCGCTTCACCTCCGATGCTCTTCAAATTCATCCTGAATCTCCACAGATTCCTCTCAATTTCGATCTCCGAACTGCTCAGATATTGAAACTAGGTCCTGTTCAATCGCTTTGCGTTACGGAAGGTTCTGATGACGGTAAATCGGGATCTTATTCTACGGGAGTCAGTATCCAGTTTAAAAACGAGGAGGATTGTGCGGCCTTTCATTCTGCAGTCCAACAATGGATAAAGGAAAACAATGTTCAAGGAAACTTGCCAAATGGAACTTTAACAACATCTAAAAGCAAATTTGATGAAAAGATAGAGCCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTTCATCAGCAAAACATGTTGCAGGACTATGTGCGGACAGGAACTTATTATGCTGCGGTTATTGAGAACCGTGCGGATTTTACTGGTCGTGTAGTAGTTGATGTGGGTGCTGGTAGCGGTATTTTGTCATTGTTTGCTGCTCAGGCCGGTGCCAAACATGTTTATGCTGTGGAAGCCTCTGAAATGGCAGAATATGCACGTAAACTCATAGCTGGGAACCCAAAATTGGCTCAACGAATTACAGTGATTAAAGGTAGAGTTGAGGATGTTGAGTTGCCCGAGAAAGCAGACATTCTGATCTCGGAGCCCATGGGCACTTTGTTAGTTAATGAGAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACTCCTACTGGGAAAATGTTTCCTGGGGTGGGAAGGATTCACATGGCACCTTTCACAGATGAATATTTGTTTATTGAAATTGCTAATAAGGCCCTATTCTGGCAGCAGCAAAATTATTATGGTGTGGATTTGACACCCTTACACGGGACTGCATTTCAAGGATATTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGATTGTTAATAGCTCCCCCAATGTTCCATGTATTAGACTTCGGCAAAATGAAGGAAGAAGAATTGTATGAAATTGACATCCCTCTGAAATTCACTGCCTCTGTGGGCACCAGAGTACATGGGTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTACTGTGCAAAGGTGGCTTACCACTGCTCCTGGTTCACCCACAACCCATTGGTACCAGCTACGATGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGGCAAGAAATTACCGGCAGGCTTCATTTGATTGCACACAATGCACAGAGTTATACAATATATTTAACATTGTCTGCTAAAATGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCTTGTAAGCTTGATCTCAAAGAACCCTACTATAGAATGTCCCAACCACAAGCTTATCCGTTAGCCCAAGATCAGCAACCTCAACCACTTGTACAAACACAGGAATTGGAAGAACCAGAAATAATGCAACAGCTTTCGCCTAATTCTTGTGCTCAGATTGATTCGCTGATGCAGAAGATTTAA 1584 0.4287 MADSLWQNWKNRDFTLASVSDLSDSSDASSPGIARFTSDALQIHPESPQIPLNFDLRTAQILKLGPVQSLCVTEGSDDGKSGSYSTGVSIQFKNEEDCAAFHSAVQQWIKENNVQGNLPNGTLTTSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPKLAQRITVIKGRVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPTGKMFPGVGRIHMAPFTDEYLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVLDFGKMKEEELYEIDIPLKFTASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLAQDQQPQPLVQTQELEEPEIMQQLSPNSCAQIDSLMQKI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04839 527 Pfam Ribosomal protein L11 methyltransferase (PrmA) 177 251 - -
Trre15g04839 527 FunFam Probable histone-arginine methyltransferase CARM1 284 491 - -
Trre15g04839 527 Gene3D Vaccinia Virus protein VP39 121 282 IPR029063 -
Trre15g04839 527 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 94 465 IPR025799 GO:0016274|GO:0018216
Trre15g04839 527 Gene3D - 284 492 - -
Trre15g04839 527 FunFam Probable histone-arginine methyltransferase CARM1 122 282 - -
Trre15g04839 527 CDD AdoMet_MTases 181 281 - -
Trre15g04839 527 ProSiteProfiles Foamy virus protease (FV PR) domain profile. 1 11 IPR001641 GO:0004190|GO:0006508
Trre15g04839 527 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 135 450 IPR025799 GO:0016274|GO:0018216
Trre15g04839 527 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 145 456 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04839 Trre-Chr15 58621775 58627745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04839 142 431 C2H2 Transcription Factor Family AT3G12270 34.416 3.11e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04839 K05931 - gmx:100780736 873.233