Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04817 ATGTTTCATTATCAGCGCCTCAGAGCTATTCTGAACCCTCAAACCCCAAAATGTTACTTTCTGAAACCATTCTCCACCATCACCACCACTTCAGATTCAGATCAACAATCTTTCACTGTTTCATATCTCACCAACACTTGCGGTTTATCACCACAAAAAGCTCTCAAAGCATCAAAACAATTTCGTTTCAACACCCCAAATAAACCTGATTCCGTTATCACCTTTTTCAAAACCCACGGTTTCTCCAATGACCAGATACAATCCATCGTTCACAGAGTACCAATACTCTTAACATTCGACCCCATCAAAACTATTTTGCCAAATTTTCAATTTTTATCATCCAAAGGTGCTTCTCCATCTGACATTGTTGACACAGTCACCAGAAACCCCCATTTTCTTGGTTCAAGCCTTCAGAAACAGATAATCCCTACTTTTGAATTGGTATTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCATCATATAAGTTTTGTATGGCATTATTAGCCAAAAGGGCTATCACCAAATCTCAATGGGATGCTAAAGTTGATGCCTTGAAAAGTTGGGGTTGTTCTGAAGATGAAATTTTTAATGCTTTTAAAAAACAGCCTGGTTTTATGCTACGGTCTGCGGACAAATTGAATGCGGTGATGCGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTTATTGCTCCTGTCAGCTCCTGCTCTTTTTGGATTTAGTATAGAGAAAAGGCTTATTCCGAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGATGAAGACGGATGCCAGCTTAATTACACCATTTAATTTGACTGATGAGTTATTCCGGCAAAGGTATGTGAATCGTTTCGAGGAGGAAGCATACAAGTTATTAAAGCTATATCAGGGGGAGGCTAGTAAACTAAAATAG 924 0.3918 MFHYQRLRAILNPQTPKCYFLKPFSTITTTSDSDQQSFTVSYLTNTCGLSPQKALKASKQFRFNTPNKPDSVITFFKTHGFSNDQIQSIVHRVPILLTFDPIKTILPNFQFLSSKGASPSDIVDTVTRNPHFLGSSLQKQIIPTFELVLEEIKELGFDPSSYKFCMALLAKRAITKSQWDAKVDALKSWGCSEDEIFNAFKKQPGFMLRSADKLNAVMRFWIKQLGWDPLLLLSAPALFGFSIEKRLIPRASVVQYLLSKGLMKTDASLITPFNLTDELFRQRYVNRFEEEAYKLLKLYQGEASKLK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04817 307 FunFam Mitochondrial transcription termination factor-like 67 292 - -
Trre15g04817 307 PANTHER CGI-12 PROTEIN-RELATED 35 150 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 SMART mt_12 123 158 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 SMART mt_12 197 228 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 SMART mt_12 229 263 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 Gene3D Transcription termination factor 3, mitochondrial 35 298 IPR038538 -
Trre15g04817 307 Pfam mTERF 74 153 IPR003690 GO:0003690|GO:0006355
Trre15g04817 307 Pfam mTERF 177 280 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04817 Trre-Chr15 58465476 58466588 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g04817 mTERF 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04817 K15032 - gmx:100792944 304.293