Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04816 ATGTTTCATTATCACCGCCTCAGAACTCTACTCCACTCTCAAACCCCAAAATGTTACCTTCTTCACACAACCCATTTTCTGAAACCATTCACCACTTCAGATTCAGATCAACAATCTTTCACTGTTTCATACCTCACCAACACTTGCAGTTTATCACCACAAAAAGCTCTTAAAGCATCAAAACGATTTCATTTCAAAACCCCCAAAAAACCCGATTCCGTTATAGCTTTTTTCAAAACCCACTGTTTCTCCAATGATCAGATACAATCCATCATTCACAAAGCACCAATACTCTTAACATTCGACCCCATCAAAACCATTTTACCAAAGTTTCAATTTTTATCCTCTAAAGGTGCTTCTTCATCTGACATTGTTTACACCGTCACCAGAAACCCCCATTTTCTTGGTTCAAGCCTTCAGAAACAGATTATCCCCACTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTACTATAATAATTGCTTCTCCTTCTTCCATTAGATATAGCCGCATGAAACCAAATGTCAATTTTTTGCTTCATTTAGGGGTCACTCCTTCAAGCATTTACCGTTTGCTTACTACTAGAATTTCTACAATTTGTTCTATTGATTTGAAAAATGTTGTGGAGGAGATTAAGGAATTAGGGTTTAATCCTTATAAATTCAGTTTTGTTGTGGCATTATTGGTCAAAAAGGTTATCACTAAATCCCAGTGGGATGCCAAAGTTGATGCCTTAAAGAGTTGGGGTTGTTCTCAAGATCAAATTTTTAATGCTTTTAAAAGACAGCCTAATTTTATGCTACGGTCTGCAGACAAACTCAATGCGGTGTTGCGTATTTGGATCGAGCAGTTTGGTTGGGATCCTTTAGTACTCCTGACAGCACCTGATATTTTCGGATTTAGTATAGAGAAAAGGCTTATTCCAAGGGCTTATGTTGTCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAAGATGCCAGCTTAGTTACACCATTTTATTTGACTGATAAGATGTTCCTGCAAAAATATGTGAATCGTTTTGAGGAGGAAGCATGGGAATGGTTCAGTTTTTGCTATCCTTTGTCAAGTGATGCTGTACTCAGAGAATCATTTAGTGTCAAGTATAAGTTTGAAAAGAAAGGTTCAGATGATATCCTGATGCTGGCACATCCTCTTCATATTCAATTCAAGAATGACACGATGATGAATTCGAATCGACCATCATTCGATCAGGTTGTGGAAAATGTCATATTGACAATGAAGAATGCTGCATTGCACAACATATTAGTAAGACAACACAATTTGGTTGCCGACAGCTACAATTACAACAGTGCAGTGGTTTGTTTACCAGAAAGCAAAATTCCAAGGCAGTTCAAATTCATAACATCAGATTCCAAAATAACTATTGGATTTCTCAGTGGTTATTTCTCCATCCAATAG 1455 0.3704 MFHYHRLRTLLHSQTPKCYLLHTTHFLKPFTTSDSDQQSFTVSYLTNTCSLSPQKALKASKRFHFKTPKKPDSVIAFFKTHCFSNDQIQSIIHKAPILLTFDPIKTILPKFQFLSSKGASSSDIVYTVTRNPHFLGSSLQKQIIPTFELVRSFCPSDQKAITIIIASPSSIRYSRMKPNVNFLLHLGVTPSSIYRLLTTRISTICSIDLKNVVEEIKELGFNPYKFSFVVALLVKKVITKSQWDAKVDALKSWGCSQDQIFNAFKRQPNFMLRSADKLNAVLRIWIEQFGWDPLVLLTAPDIFGFSIEKRLIPRAYVVQYLLSKGLMKKDASLVTPFYLTDKMFLQKYVNRFEEEAWEWFSFCYPLSSDAVLRESFSVKYKFEKKGSDDILMLAHPLHIQFKNDTMMNSNRPSFDQVVENVILTMKNAALHNILVRQHNLVADSYNYNSAVVCLPESKIPRQFKFITSDSKITIGFLSGYFSIQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04816 484 SMART mt_12 161 189 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 SMART mt_12 195 222 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 FunFam Mitochondrial transcription termination factor-like 139 356 - -
Trre15g04816 484 Pfam mTERF 242 344 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 Pfam mTERF 76 278 IPR003690 GO:0003690|GO:0006355
Trre15g04816 484 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 54 87 - -
Trre15g04816 484 Gene3D Transcription termination factor 3, mitochondrial 156 361 IPR038538 -
Trre15g04816 484 PANTHER CGI-12 PROTEIN-RELATED 37 352 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04816 Trre-Chr15 58460031 58462482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04816 360 401 Glycoside Hydrolase AT1G18310 57.143 1.06e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g04816 mTERF 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04816 K15032 - gmx:102666739 338.576