Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04814 ATGTTTCACCTTCACCGTCTCAGAGCTCTCCTCCACCTCAACAATCTTCCCCAAACCTCAAAATGCCACCTTCTTCTTCTTCAATCTCACTTTCTCAACCCATTCTCTTTCTCCACCACAACTCCAGATTCAGATCAACAAACTTTCACCATATCCTACCTCACCAACACCTGTGGCTTATCTCCACAAGATGCTCTCAAACTATCCAAACGACTTCGTTTCAAAACCCCCCAAAAACCCGATTCCTTTATCACCTTCTTCAAAAACCACGGTTTTTCCATTCAAAACATACAATCCATCATTCTCAAGGATCCTGAGCTTCTTGTCTCTAACCCCATCAAATCAATTCTACCAAAGTTTCAATTTTTAGCTTCCAAAGGTGCTTCTCCTTCTGACATTGTGGCCACTGTAACAAGATGCCCTCGTTTTCTTCGTGTAAGTCTTGACAAACACATTACCCCTGCTTTTGATTTGGTACGAAGTTTCTGTCCCTCTGATCAAAAAGCTATTGATTCTATAATTGTTTGTCCAACTTCAATTAGTGATAGTAGACTGAAACCAAATGTGAAATTTTTGATTGATTTTGGTGTCACTGGTTCAAATATTTATCATTTACTTAGGACTAGACCTTCTATAATATGTTCTACTGATTTGAAAAATGCTGTTGAGGAGATTAAGGAATTAGGGTTTGACCCTTCAAAAGGTTCTTTTAGTGTAGCTTTACTGGCCAAAAGGGCTACCACTAAATCACAATGGGATGCTAAAGTTGATGTCTTGAAGAGTTGGGGTTGTTCTGAAGATGAAATTTTGAATGCATTTAAAAGGCACCCTAATTTTATGCTACGGTCTCCCGATAAACTCAATGCGGTTATGAGTTTTTGGGTCGATGGTCTTGGTTGGGATCCTTCGGTGCTATTGGCTAAACCGGTACTTTTTGGGTTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAATTGTCAAGTATCTTCTATCCAAAGGTTTGTTAAAGGAGGGTGCTTCTTTATGTACACCATTTAACTTGAGCGACGAGGATTTCCAGCGAAGGTATGTGAAACGTTTTGCGGTGGATATATCTTGGCTATTAAAGCTAAATAAGGGAGAATGCTAG 1131 0.3961 MFHLHRLRALLHLNNLPQTSKCHLLLLQSHFLNPFSFSTTTPDSDQQTFTISYLTNTCGLSPQDALKLSKRLRFKTPQKPDSFITFFKNHGFSIQNIQSIILKDPELLVSNPIKSILPKFQFLASKGASPSDIVATVTRCPRFLRVSLDKHITPAFDLVRSFCPSDQKAIDSIIVCPTSISDSRLKPNVKFLIDFGVTGSNIYHLLRTRPSIICSTDLKNAVEEIKELGFDPSKGSFSVALLAKRATTKSQWDAKVDVLKSWGCSEDEILNAFKRHPNFMLRSPDKLNAVMSFWVDGLGWDPSVLLAKPVLFGFSIEKRLSPRASIVKYLLSKGLLKEGASLCTPFNLSDEDFQRRYVKRFAVDISWLLKLNKGEC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04814 376 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 SMART mt_12 170 198 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 FunFam Mitochondrial transcription termination factor-like 148 365 - -
Trre15g04814 376 Gene3D Transcription termination factor 3, mitochondrial 180 364 IPR038538 -
Trre15g04814 376 Gene3D Transcription termination factor 3, mitochondrial 61 179 IPR038538 -
Trre15g04814 376 PANTHER CGI-12 PROTEIN-RELATED 47 360 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 Pfam mTERF 85 231 IPR003690 GO:0003690|GO:0006355
Trre15g04814 376 Pfam mTERF 250 354 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04814 Trre-Chr15 58453043 58454173 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g04814 mTERF 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04814 K15032 - gmx:102666739 336.265