Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04811 ATGCTGAAATTCTTCACCACAACTGCACTTGTTCCCGCCAACACCAATCTTTTGGTCGTATTCACAGCACCATCATCTTCATCATGCTCCATTTCAAAACATCACCACTATTCATCAATTTTCAAATTCTCCACCACTTCCACCACCTTCGAACAACCACAACAATCTTTCACCATCTCTTACCTCATCAACAACTGCGGTTTCACCCCACAAACCGCTTCCAAAGCTTCCCAAATTCTCTCTTTCTCCAACTCCCAAAAACCTGATTCAGTTCTCGCTTTCTTCACAACCCACGGTTTCTCTAACTCTCAAATACGAGGCATCGTCAAAAGGGAACCCCGGTTACTTTCACTCAACCCCAACAACGTTTTATTACCAAAGTTTCAATTTTTACTCTCCAAAGGTGTTTCTAACTCTGATCTTATTCACATTGTTAATGCTAACCCTAGATTTCTTAGAAGAAGTTTACAGAATCATATTATTCCTAATTATGAATGTGCAAAAGGGCTTCTTCAATCTGACAAAAAAATTATTGCTTGTGTTAAACGTTATAGTTTTCTTTCTCAAAATCATTTGCCTAAGAATGTTAAATTGTTGCTTGATAATGGAGTTTCTCATTCAAATATTGCTAGATTGCTTCAGTGGTGGCCTAGTATATTTGAATCATTTGATTTGTTGGACACTGTTGAGGAATTGAAGCAGCTCGGTTTCGATTCCAAAACTTCCCCTTTTAGCATAGCGTTTCTTGCTAAGAAAACTGTTACTAAAGCTAAGTGGGATGAGAAAGTTGAAATCTTTAAGAAATGGGGTTGGTCTGATGAACATATTCTTCAAGCATTTAAGAAGCAGCCTTTTTGTATGCTGTCATCCCCTCGTAAAATGAATGCAGTCATGAATTTTTGGGTTAATCACTTAGGTTTCGATTCTTTGGACCTCGCTAGAGCTCCTGGAATTTTGCAGCTCAGTCTCGAGAAGAGGATTATTCCTAGAGGTTTAGTTGTCCAGTTTCTTAACTCAAAAGGCCTTCGACAAAAGGATGCAAGTATACATACACCATTTCGTGTATCTGAGAAGTTGTTCCTGGAAAAGTTTGTGAACCGTTTTGCGGAGCATTCTTCTGATCTGTTAAAGCTTTACGAGGAAAAAATGAATCTTGGAGATAGCAGGAACGGCCTTCAGATGGTGTGA 1188 0.388 MLKFFTTTALVPANTNLLVVFTAPSSSSCSISKHHHYSSIFKFSTTSTTFEQPQQSFTISYLINNCGFTPQTASKASQILSFSNSQKPDSVLAFFTTHGFSNSQIRGIVKREPRLLSLNPNNVLLPKFQFLLSKGVSNSDLIHIVNANPRFLRRSLQNHIIPNYECAKGLLQSDKKIIACVKRYSFLSQNHLPKNVKLLLDNGVSHSNIARLLQWWPSIFESFDLLDTVEELKQLGFDSKTSPFSIAFLAKKTVTKAKWDEKVEIFKKWGWSDEHILQAFKKQPFCMLSSPRKMNAVMNFWVNHLGFDSLDLARAPGILQLSLEKRIIPRGLVVQFLNSKGLRQKDASIHTPFRVSEKLFLEKFVNRFAEHSSDLLKLYEEKMNLGDSRNGLQMV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04811 395 FunFam Mitochondrial transcription termination factor-like 156 372 - -
Trre15g04811 395 Pfam mTERF 188 360 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 Pfam mTERF 92 240 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Trre15g04811 395 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 SMART mt_12 70 101 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 SMART mt_12 210 238 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 SMART mt_12 309 343 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 PANTHER CGI-12 PROTEIN-RELATED 54 367 IPR003690 GO:0003690|GO:0006355
Trre15g04811 395 Gene3D Transcription termination factor 3, mitochondrial 173 377 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04811 Trre-Chr15 58432162 58433349 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g04811 mTERF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04811 K15032 - gmx:102667698 383.645