Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04810 ATGAAGTATTTCAAGGCTGAACAAATTGATGCAAGAGATGTCAAAGCAAGATTCAAAGAATTGTTTAAAGGCCATAAACATTTAACCTTGGGAATCAACAACAACAACAACATGAGGCCAAAGAAATACCAAATCAGCCTTCGTCAATTATTAGATGATCGTCTAGTGCGTTTAGAAGCAGCAGCTTTTATCAGTCAAGTAAAAGTTGTGTTTAAAGATAACAATGAAAAATATTCTGAGTTTATACAAGTCATGAAGGATTTCAACCATAACAAAACGGATGCATTAAGTATCGTTTTTTTTTTTTTTTTGAGATTAAGTATCGTTGAAATGGTGATTAAGCTGTTTAAAGGACATACTGATTTACTTTTGGAATTCAACAAATTCATGCCAGAAGGATATCTATCAGAACAAATTTCCTTAGTTCCTTTGTATTATGATCATAATCAGGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATAAAGTAAAACTTGTGTTTCAAGACAACAAAATGGAAATATATTATGAGTTTTTACAAGTCATCGATGATCACAACTCACAAGGCTCAAGGAATTGA 582 0.3144 MKYFKAEQIDARDVKARFKELFKGHKHLTLGINNNNNMRPKKYQISLRQLLDDRLVRLEAAAFISQVKVVFKDNNEKYSEFIQVMKDFNHNKTDALSIVFFFFLRLSIVEMVIKLFKGHTDLLLEFNKFMPEGYLSEQISLVPLYYDHNQGHQLVIKDAFLNKVKLVFQDNKMEIYYEFLQVIDDHNSQGSRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04810 193 SUPERFAMILY PAH2 domain 159 189 IPR036600 GO:0006355
Trre15g04810 193 PANTHER SIN3B-RELATED 59 184 IPR039774 GO:0003714
Trre15g04810 193 Gene3D Paired amphipathic helix 59 131 IPR036600 GO:0006355
Trre15g04810 193 SUPERFAMILY PAH2 domain 59 133 IPR036600 GO:0006355
Trre15g04810 193 ProSiteProfiles PAH domain profile. 54 133 IPR003822 GO:0006355
Trre15g04810 193 Pfam Paired amphipathic helix repeat 76 129 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04810 Trre-Chr15 58428466 58429047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04810 59 143 WRKY Transcription Factor Family AT4G12020 35.294 1.74e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g04810 PAH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04810 K11644 - cam:101488742 112.079