Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04807 ATGATGATGATGATGATGATGATGAAATTCTTCACCACCACTACACTTGTTTCCACCAAGAACAATCTCTTGCTCCTATTCACAACACCATCTTCATCATGTGCTACTTATTCTCTTATTGCAAAACATCACCACTATTCATCAATTTTCAAATTATTCACCACTTCCACCACCTTCGAACAACCACAACAATCTTTCACCATATCTTACCTCATCAACAATTGCGGTTTCACCCCAGAAACCGCTTTCAAAGCTTCCCACAATGTCACTCTCTCCAACTCCCAAAAACCCGATTCAGTTCTCACCTTTTTCACAACCCACGGTTTCTCTAACTCTCAAATTCGCGACATCATCACAAGAGAACCCCGGTTACTTTCATACGACCCCAACAACGTTTTTTTACCAAAGTTTCAATTTTTACTCTCCAAAGGTATTTCTAACTCTGATCTTATTCACATTGTTAGTGCTAACCCTAAATTTCTTAGAAGAAATTTAGAGAATAATATCATTCCTAATTATGAATGTGCAAAAGGGCTTCTTCGGTCTGACAAAAAAATTATTGCTAGTGTAAAACGGTTTAGTTTTCTTTGTCAAAATCAACTGCCAAATAAGGTTAAATTGTTGCTTGACAATGGAGTTTCTCATTCAAATGTTGCTAGATTGTTTCATTGGTGGCCTAGTATATTTAACTCATATGATTTGTTGAATACTGTTGAGGAATTGAAGCAACTCGGTTTCAATTCATCAACTTCGGCTTTTAGTAAGGCGTTTCTTGCTAAGAGAACTGTTACTAAAGCTAAGTGGGATGAGAAAGTTGAAATCTTTAAGAAATGGGGTTGGTCTGATGAACATATTCTTCAAACATTTAAGAAGCAGCCTTTTTGTATGCTGATATCCCCTCGTAAAATGGATGCAGTCATGAATTTTTGGGTTAATCACTTAGGTTTTGATTCTTTGGACCTCGCTAGAGCTCCTGGAATTTTTCAGTGCAGTCTCGAGAAGAAGATTATTCCTAGAGGTTTAGTTGTCCAGTTTCTTATCTCAAAAGGCCTTCGACGAAAGGATGCAGGTCTATATACACCATTTGTTGTATCTGAGAAGTTGTTTGTTGAAAAGTTTGTGAACGGTTTTGCGGAGCATTCTTCTGATCTGTTAAAGCTTTACGAGGAAAAAATGAATCTTGCAGATAGCAGGAATGGCCTTCAGATGGTGTGA 1215 0.3737 MMMMMMMMKFFTTTTLVSTKNNLLLLFTTPSSSCATYSLIAKHHHYSSIFKLFTTSTTFEQPQQSFTISYLINNCGFTPETAFKASHNVTLSNSQKPDSVLTFFTTHGFSNSQIRDIITREPRLLSYDPNNVFLPKFQFLLSKGISNSDLIHIVSANPKFLRRNLENNIIPNYECAKGLLRSDKKIIASVKRFSFLCQNQLPNKVKLLLDNGVSHSNVARLFHWWPSIFNSYDLLNTVEELKQLGFNSSTSAFSKAFLAKRTVTKAKWDEKVEIFKKWGWSDEHILQTFKKQPFCMLISPRKMDAVMNFWVNHLGFDSLDLARAPGIFQCSLEKKIIPRGLVVQFLISKGLRRKDAGLYTPFVVSEKLFVEKFVNGFAEHSSDLLKLYEEKMNLADSRNGLQMV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04807 404 Pfam mTERF 198 367 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 Pfam mTERF 101 194 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 PANTHER CGI-12 PROTEIN-RELATED 63 376 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 Gene3D Transcription termination factor 3, mitochondrial 182 382 IPR038538 -
Trre15g04807 404 FunFam Mitochondrial transcription termination factor-like 165 381 - -
Trre15g04807 404 SMART mt_12 219 247 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 SMART mt_12 151 182 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 SMART mt_12 115 146 IPR003690 GO:0003690|GO:0006355
Trre15g04807 404 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04807 Trre-Chr15 58420936 58422150 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g04807 mTERF 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04807 K15032 - gmx:102667698 362.459