Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04806 ATGGTGGATAACAATGTTGGAGGAAGTTGTTCAAATTACAATGAAAATGGTGGAATAATAAAGGAACAAGATAGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAAATATTACCTCAAAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGTAGGAAAGAAAGAAGAAAAACAGTGAATGGTGATGATATTTGTTGGGCTTTGGCTACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTTGATAGAACACCAAATAATAATAATGTTCAAGATAGAGGAAATTAA 387 0.3333 MVDNNVGGSCSNYNENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDRTPNNNNVQDRGN 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04806 128 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre15g04806 128 FunFam Nuclear transcription factor Y subunit B-3 15 128 - -
Trre15g04806 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre15g04806 128 SUPERFAMILY Histone-fold 23 126 IPR009072 GO:0046982
Trre15g04806 128 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Trre15g04806 128 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Trre15g04806 128 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Trre15g04806 128 Gene3D Histone, subunit A 18 128 IPR009072 GO:0046982
Trre15g04806 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04806 Trre-Chr15 58412234 58412620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04806 5 121 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.152 1.64e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre15g04806 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04806 K08065 - mtr:11422870 216.853