Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04789 ATGGCCCCTACCAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCCGCATCTAGTAAAGATAAAGATGCAGCAAATACCAGCAAGAATCGGCAGAAGGCTAGTCCTGGTAATCAAAAGAAGAGAAAATTGGCCGACATGTTAGGATCGCAATGGAGTAAGGAGGAGCTTGAACGTTTCTATGAAGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCTCTGTACACTATGAACAGGGCATACTTATCTCTTCCAGAGGGAACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTATACTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGACACAGAAGTACGTAAAAAGTCTAAAAAACGTCCACGGGGAAAGCCAAATGACAATAAAGTAGTAGATGGACACTTTTCAGATCATTCTCAGCCACAATCTGTTGCATCAGACGATGGTTGCCTGTCATTGTTGAAGAATAGGCATTCTGGAATTAGGCCTCATGCCGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGGGGGAAAGTTTTTTTCATCTGCCAGGCAGGACTCCAAACAAATGGTTGATACAAATGATGTCACTCATAAAATTGCATTAGCTTTGGCGGAGGCTTCACAAAGAGGTGGTTCTTCAAAAAAAATTGGATCGCCAAACAAGAAAAACATGCCATCACCCAAGCTTAAAATTGGGAAGAAGCATGTTAAACCAGAAATAGTCAGAGCTAAGTTTGGCAACACTGACATGGATGAGGGTAGTTCTGAGTTGAGTTTAGGAAGCGCAGAAGGTGATATTGGAGATTATTCTAGAAAATTAATTCATCGGAGCGGTAGAGAAAATACTGGAAGAGGAAAGAATCAGGAAAAGGGAAAAAAACGCTACAGAAAGAATTTAGAATCCGAGGAAAATATAAACAAGCATTTGAATGACATAAAGGAGGCTTCCAGTGGGACCGATGATGGTAAAAACCAGAGTTCCTTCAAGTCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCTCACAAGGGTCCCGGAAAGAAAAGTAAAAAACTACTTTTTGAGAAAGATGAAGGTTCGGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCAGAAACAAACCCCGACACTGAATCATCTGTGCAGTTCAACGAAGGAAACCATGATATGGTTGATGAGTCTAAAAAGGAAACAGATAATGGAAACAGTTCGAGAAAATGGGGCAAGGTTTTTTCTGATAAAGGAGCTGCTCCTCACAAAGCAGAGGTAGCGTACCAGATTAATGCAGGAAGCAAGAAAAGAAAACAAAAGTCACTTACCTTAAAAAATGATGAAACACATACTGGTTCTCATTTAAGTGGCTCCCCGAAAATGAAGGTTACTGATGAGGTGAAGTCCATGGTTAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCCAGACAACTAAAATGGGAGAGATCCCTAGGAATAATTTCGCCTTCGAATATTATTGACAAAGCAAAAAGGGATGGTTCATATGTTTCCCCCAAAAAAGTTTTGTCTACTAACCAAGTCGGTCAAGTAAACAGAGACCGACCTAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAAAAAGATCACACAGTGTCTGAAAAATCAATTGCTTCATACCGGTGGAATAGTATTGAACGTCACAAGGGAAAGCTTATTAATTGTTTGTCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAATGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGGAGATTTTCAGAGCAATTTTTGATAGAAGAAAAACATAAACTTAATCAGTACCGAGAATCTGTCAGATCACATTATGCTGAAGTCCTTGCTGGTACCAAGGAAGGGCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCGAAAACAAGGGAAATTCATGATGGAAGCATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAGAATATGCCCATGTCTTTGATAAGACACCATATCACTCCTAGAATAAATGAGAACCTTCGTGAGCTTACGCGTAATGGGAAACTAGCACAAAGAAAGATCTCTGATCACACAATATTGTCCCCAAGTGATAACTCAGATGCCATAAAAGGTCATCGTGTACCACCCACTATGCATGGGTTTTCTTCAAGCTGCAAATCACAAGCAAAAGCTGCAGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCTCAATCTTCCTTTCTTGATAGAGTCCATTCCAAAGAAGCTGATATATTAGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCTGAACTGAAGCAAATGAATGATGGGGTATCAGAAAGCCAGAAATATGGAGACAACTCGGTGAAAGATTCGGAACCTTTTAAAAGGAATTATGCTTCAGTACTAAAGCAATTATCTGAAGCAAATGAACAGGTTTCTTCTGGCTTGTTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGCTCCTCAGTTTTGTCATTGAAGCCCATGCCAAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACCATGGTTGTTCAAGCTGCTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATCAATAACCGGATTTCAGTCGATGACTCTACTGCTTCAGCCACAAATTTTCTTCCCCTAGATTCTATTACTTTGGCTTCTCGGGATCAATTGGCTGCTAGCAGCACGTTGAACATTTTGGCAAGGTGTCATGTACAAGATGATGAACTTAACAGTTCATCTGACCAAAATGAAATGAAAATCCCATCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATTATTCAGAAGTGTACGGAACGACAATTTCCCCCAGCTGATGTTGCGCAGGCATTAGATTCTGCCGTCACCAGTTTGCAGCCATTATGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATACTGGCACTTGTACCTACCTAG 3471 0.4036 MAPTRKSRSVNKRFSNIREAASSKDKDAANTSKNRQKASPGNQKKRKLADMLGSQWSKEELERFYEAYREYGKDWKKVALAVRNRTMEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKESNEDTEVRKKSKKRPRGKPNDNKVVDGHFSDHSQPQSVASDDGCLSLLKNRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMVDTNDVTHKIALALAEASQRGGSSKKIGSPNKKNMPSPKLKIGKKHVKPEIVRAKFGNTDMDEGSSELSLGSAEGDIGDYSRKLIHRSGRENTGRGKNQEKGKKRYRKNLESEENINKHLNDIKEASSGTDDGKNQSSFKSNFDTDFANAKSVRSSHKGPGKKSKKLLFEKDEGSAFDALKTLADLSLMMPETNPDTESSVQFNEGNHDMVDESKKETDNGNSSRKWGKVFSDKGAAPHKAEVAYQINAGSKKRKQKSLTLKNDETHTGSHLSGSPKMKVTDEVKSMVKGKRSSVSTAHSRQLKWERSLGIISPSNIIDKAKRDGSYVSPKKVLSTNQVGQVNRDRPRRKMEKPKPMVQKDHTVSEKSIASYRWNSIERHKGKLINCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPRINENLRELTRNGKLAQRKISDHTILSPSDNSDAIKGHRVPPTMHGFSSSCKSQAKAAGSEICNGQSASSSQSSFLDRVHSKEADILAISELTRALEKKELVLSELKQMNDGVSESQKYGDNSVKDSEPFKRNYASVLKQLSEANEQVSSGLFCLRQRNAYQASSSVLSLKPMPNFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQAAQAMSVFRKTEKVERIEDAINFINNRISVDDSTASATNFLPLDSITLASRDQLAASSTLNILARCHVQDDELNSSSDQNEMKIPSELISHCLATLLIIQKCTERQFPPADVAQALDSAVTSLQPLCSKNLPIYGEIQKCMGIIRNQILALVPT 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04789 1156 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 1 49 - -
Trre15g04789 1156 PANTHER LIN-9 1 1156 IPR010561 GO:0006351|GO:0017053
Trre15g04789 1156 MobiDBLite consensus disorder prediction 557 586 - -
Trre15g04789 1156 Coils Coil 327 347 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 309 353 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 471 503 - -
Trre15g04789 1156 CDD SANT 56 90 IPR001005 -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 432 447 - -
Trre15g04789 1156 ProSiteProfiles Myb-like domain profile. 54 86 IPR001005 -
Trre15g04789 1156 Gene3D - 3 108 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 1 17 - -
Trre15g04789 1156 SUPERFAMILY Homeodomain-like 51 99 IPR009057 -
Trre15g04789 1156 SMART sant 52 100 IPR001005 -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 18 32 - -
Trre15g04789 1156 Coils Coil 872 892 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 418 455 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 567 586 - -
Trre15g04789 1156 Pfam Myb-like DNA-binding domain 54 90 IPR001005 -
Trre15g04789 1156 SMART DIRP_2 626 727 IPR033471 -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 241 265 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 309 367 - -
Trre15g04789 1156 MobiDBLite consensus disorder prediction 124 173 - -
Trre15g04789 1156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 86 IPR017930 -
Trre15g04789 1156 Pfam DIRP 625 726 IPR033471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04789 Trre-Chr15 58292378 58307289 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g04789 DIRP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04789 - - gmx:100811517 1707.19