Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g04788 | ATGGAGGAATCAACTTCCGATAACGACAGACACAAAATCCGCAACATATGCATCTTAGCACACGTAGACCATGGCAAAACAACCCTGGCTGACCAGCTTATCGCCACTGCCGGCGGCGGCATGGTCCATCCAAAAGTAGCAGGTAAACTCCGTTTCATGGATTTCCTCGACGAAGAACAACGTCGTGCTATAACAATGAAAAGTTCATCAATCTCCCTTCACTACAATCACCATACAATTAATCTCATTGATTCCCCCGGTCACATCGATTTCTGCGGCGAAGTTTCCACCGCCGCTCGTCTTTCCGATGGTGCACTTCTTCTTGTTGATGCTGTTGAAGGTGTTCATATTCAAACTCACGCTGTTCTTCGTCAATGTTGGATCGAACGTCTTTCACCTTGTCTTGTTCTTAATAAGATGGATAGGTTAATTACTGAGTTGAAACTTACTCCTTCTGAAGCTTATGCGCGTTTATTGAGAATTGTTCATGAGGTTAATGGTATTGTTAGTGCTTATAATTCGCAGAAATATTTATCTGATGTTGATTCTCTTCTTGCTGGTGGTACTGCTGCTGGTGGTGAAGTTATGGAGGATTATGATGATGTTGAAGATGTTTTTCAGCCTCAGAAAGGTAATGTTGTGTTTGCTTGTGCTTTAGATGGTTGGGGTTTTGGGATTCATGAATTTGCAGAGATTTATGCTTCAAAGCTTGGTGCTAGTGTTAGTGCATTACAGAAGGCTTTATGGGGTCCAAGATATTTTAATCCTAAGACTAAGATGATTGTAGGGAAGAAAGGGATTGGTGCTGGTAGTAAGGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTTTATCAAGGGGCACTTGAAGGGGATAAAGGGTTGGTTGAGAAGGTTATTAAGTCTTTTCATTTACAGGTTCCGGCGCGTGAGTTGCAGAATAAGGATTCTAAGGTTGTGCTTCAAGCTGTTATGAGCCGTTGGCTTCCTCTTTCGGATGCTATTTTGTCGATGGTGGTGAAGTGTATGCCGGATCCTGTGGCAGCTCAGGGGTCTAGGATATCGCGGCTGATTCCGCAGCGTGAGGTTGGTTCTGGAGATGGGGTTGATAGGAAGGTAGTGGAAGAGGCGGAGCTTGTGAGGAAGTCGGTGGAAGGGTGTGATTGGAGGGATGAGGTTCCTTGTGTTGCATTTGTTGCGAAAATGTTTGCTCTTCCTGTTAGAATGCTTCCTCCTCCACAAGTAGGGGAGGTTGTGGGGAGTTTTGGTGAGGAAGGTGAGGGTGAATCTGATGAGTGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTGTCTGTTGGGCAGAGAGTTTTTGTGATTTCGGCTTTGTATGATCCTTTGAAAGCGGAATCGACGCAAAAGCATATACAGGAGGCTGAATTGAAATCCATGTATCTGATGATGGGGCAAGGGTTGAAAGTAGTGAAATCTGCGAAAGCAGGAGATGTTGTTGCAATCCGGGGACTTGGCCAGTATATTTTGAAAAGTGCTACACTTTCTTCTACTAGGAACTGTTGGCCTTTTTCGAGTATGGCGTTTCAAGTTGCCCCGATTTTGAGGGTTGCTATTGAGCCATCTGACCCTGCAGATATGGGTGCACTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCGGATCCATTTGTTGAGGTCACGGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCAGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAAGATAGGTTTGCAAAAGTAAGGTTGGAAGTCTCTCCACCCCTTGTGTCTTACAAAGAGACCATTGAGGGAGAGGTATCCAACATGCTGGAAAATTTGAAAGTTCTCAGCAAGAACTTAGATTATGTTGAGAAAACGACGCCCAATGGAAGATGCATTGTACGCGTGCAGGTGATGAAACTTTTACCTTCTCTCACAAAGGTTCTTGATGAAAGTGCTGATATACTTGGGGATATCATTGGAATAAAGTCAGGGCAGACAGTTAAAAGTTTAGAAACTCAGGGGACAAATATTCTCGAAAATGGGAATCCAGCTGAAGTGATTAAAAAACGTATAATGGATGCAATTGAGAGTGACATTTTGTGTAGGATTGAGAATGATGAAGACCATGCCGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGTCCGAGTTACATTGGCGCTAACGTTCTCTTTACTCCTGATATTAAAGCAGAGAGTAGTGATAGCTCTGTTCTAATACGTGGTTCTTCTCAATTATCGGAAAAGTTGGGTTTTGTGTCTGATACTGGTAACAGTAACCCGGTTTCAGAGGCATCTTCAAATGACAGCCAAGTGTTGTATATGGATGCCGAGCGTCTTGAGAGTAATGTTATAACCGGGTTCCAACTAGCAACTTCAGCTGGGCCTTTATGCGATGAACCTATGTGGGGTCTGGCATTTGTCATTGAGGCACGAATAACACCATCTACAGGACATGATGAATCCGAAACACACCAACAATCCGACCAGTATGGCATCTTTGCAGGGCAGGTTATTGCAACCGTTAAAGATGCCTGTAGGACTGCTGTGCTAAAGAATAAGCCAAGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACTGAATTTTTGGGTCCCATGTATGGTGTACTTTCCCGTAGAAGGGCTCGGATTTTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTATTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTACTGATGAGCTTAGAAGTAGGACTTCTGGCGCTGCGAGTGCAATTCTCGTCCTTAGCCATTGGGAAGCACTACTCGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATCGAAGAGTTTGGAGATGGTTCCAGCGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACAGTCAGACGGCGGAAGGGCCTTCATGTCGAGGAAAAGAAAGCTCAGTGCAGAGGAATTACTTCTTCTGTGAGGTGTAACCTTTTATTTTTAAGCAAACAGAAAAACTGGAGCCATTCTTCTGAGTATATTCAAAATAAGTACCAACATGACATATAG | 3150 | 0.4365 | MEESTSDNDRHKIRNICILAHVDHGKTTLADQLIATAGGGMVHPKVAGKLRFMDFLDEEQRRAITMKSSSISLHYNHHTINLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKMDRLITELKLTPSEAYARLLRIVHEVNGIVSAYNSQKYLSDVDSLLAGGTAAGGEVMEDYDDVEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVSALQKALWGPRYFNPKTKMIVGKKGIGAGSKAKPMFVQFVLEPLWQVYQGALEGDKGLVEKVIKSFHLQVPARELQNKDSKVVLQAVMSRWLPLSDAILSMVVKCMPDPVAAQGSRISRLIPQREVGSGDGVDRKVVEEAELVRKSVEGCDWRDEVPCVAFVAKMFALPVRMLPPPQVGEVVGSFGEEGEGESDECFLAFARIFSGVLSVGQRVFVISALYDPLKAESTQKHIQEAELKSMYLMMGQGLKVVKSAKAGDVVAIRGLGQYILKSATLSSTRNCWPFSSMAFQVAPILRVAIEPSDPADMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVRLEVSPPLVSYKETIEGEVSNMLENLKVLSKNLDYVEKTTPNGRCIVRVQVMKLLPSLTKVLDESADILGDIIGIKSGQTVKSLETQGTNILENGNPAEVIKKRIMDAIESDILCRIENDEDHAEKCRLKWLKLLRRIWALGPSYIGANVLFTPDIKAESSDSSVLIRGSSQLSEKLGFVSDTGNSNPVSEASSNDSQVLYMDAERLESNVITGFQLATSAGPLCDEPMWGLAFVIEARITPSTGHDESETHQQSDQYGIFAGQVIATVKDACRTAVLKNKPRLVEAMYFCELNTPTEFLGPMYGVLSRRRARILKEEMQEGSPLFTVHAYVPVSESFGFTDELRSRTSGAASAILVLSHWEALLEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLHVEEKKAQCRGITSSVRCNLLFLSKQKNWSHSSEYIQNKYQHDI | 1049 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g04788 | 1049 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 11 | 241 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | CDD | EF2_II | 398 | 520 | - | - | |
Trre15g04788 | 1049 | Gene3D | - | 631 | 880 | IPR014721 | - | |
Trre15g04788 | 1049 | Coils | Coil | 612 | 632 | - | - | |
Trre15g04788 | 1049 | CDD | aeEF2_snRNP_like_IV | 606 | 890 | - | - | |
Trre15g04788 | 1049 | Pfam | Elongation factor G C-terminus | 884 | 964 | IPR000640 | - | |
Trre15g04788 | 1049 | SUPERFAMILY | EF-G C-terminal domain-like | 886 | 984 | IPR035647 | - | |
Trre15g04788 | 1049 | FunFam | Elongation factor like GTPase 1 | 226 | 333 | - | - | |
Trre15g04788 | 1049 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 534 | 610 | - | - | |
Trre15g04788 | 1049 | Pfam | Elongation factor Tu domain 2 | 439 | 517 | IPR004161 | GO:0005525 | |
Trre15g04788 | 1049 | Gene3D | Yeast translation eEF2 (G' domain) | 226 | 333 | - | - | |
Trre15g04788 | 1049 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 7 | 1011 | - | - | |
Trre15g04788 | 1049 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 348 | IPR027417 | - | |
Trre15g04788 | 1049 | Gene3D | Translation factors | 350 | 532 | - | - | |
Trre15g04788 | 1049 | SUPERFAMILY | EF-G C-terminal domain-like | 533 | 607 | IPR035647 | - | |
Trre15g04788 | 1049 | SUPERFAMILY | Translation proteins | 391 | 529 | IPR009000 | - | |
Trre15g04788 | 1049 | CDD | eEF2_snRNP_like_C | 886 | 964 | - | - | |
Trre15g04788 | 1049 | FunFam | Elongation factor like GTPase 1 | 882 | 1015 | - | - | |
Trre15g04788 | 1049 | CDD | EF2_snRNP_III | 535 | 606 | - | - | |
Trre15g04788 | 1049 | FunFam | Translation elongation factor 2 | 534 | 610 | - | - | |
Trre15g04788 | 1049 | CDD | EF2 | 14 | 234 | - | - | |
Trre15g04788 | 1049 | Gene3D | - | 882 | 1014 | - | - | |
Trre15g04788 | 1049 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 609 | 885 | IPR020568 | - | |
Trre15g04788 | 1049 | Pfam | Elongation factor Tu GTP binding domain | 12 | 342 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | Gene3D | - | 4 | 208 | IPR027417 | - | |
Trre15g04788 | 1049 | PRINTS | GTP-binding elongation factor signature | 133 | 142 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | PRINTS | GTP-binding elongation factor signature | 81 | 91 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | PRINTS | GTP-binding elongation factor signature | 61 | 69 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | PRINTS | GTP-binding elongation factor signature | 97 | 108 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | PRINTS | GTP-binding elongation factor signature | 15 | 28 | IPR000795 | GO:0003924|GO:0005525 | |
Trre15g04788 | 1049 | SMART | EFG_C_a | 883 | 972 | IPR000640 | - | |
Trre15g04788 | 1049 | FunFam | Elongation factor 2-like protein | 4 | 214 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g04788 | Trre-Chr15 | 58285026 | 58288629 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g04788 | 7 | 1013 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 68.732 | 0.0 | 1415 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g04788 | K14536 | - | pvu:PHAVU_003G003900g | 1622.06 |