Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04786 ATGTCAACCTCTAAAAAAACAACATCAGATTCATCTTTCAAAGGATATCATGAAACAAATCAAACACAAATGTGTCTATCATCACTAATCCTTCAAAGGAACAATAACACATTACCTAATGGTGAAAAAAGAGGAAGAAGAAAACAAACAGAACCAGGAAGATTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTATTTCCATGAAAGGAAATCAAGCTAGAACAAATTTCATTTACTCTGATACTATCAATTTTCATACACTTGTTTCTTCTCCTTTAGATCTTCAAGTTCAAGTTCAACAAACTCTTTTGACACCTTCAACACAAAACAATCAAAATAGTACACTTTTTCAGCTTAACACTCCACACAACACTACTACTAGTAGAAATGATCAAAACTCTTCCTTGATGAGTACTTTTGATCATGAAAAAACAAAAAATGAATCATCAACTCATATTCATGATGAAAATTTCTTTTTTACTAATGAGACTAAAAATAACTCTGGCTATCTTGAATGCATAGTTCCTGATAACTGTTTGAGAAACAGCAATGTTAATGTTAGTGGTTCAAGTGATGAAAAAGTTTGCAACAATGTTGAAAGTAACAAATTTTTCATGGAGGGTGAATCACATTTTGGTATGGCTTCATTCTCTGAAGAAATGCCAACAAGGGTCTCTAGCTTTTCAGAGTTTTCTTGTTATCCAAGTGAAATAAGTCAAGGTTTCTTGGATTGGAATTCTAATGAACTTTCAGCTATATTTAACAACAATCCATTAAGAGTTGAAGATGAATGCATGGATACATTGTATCCTAATTATCCAAACTATGTGATGATGAATGACCAATCTGCTTCTTCAACTAACTATTCTCCATCACTTGAATTTGGTTACCCTCTCTTTTGA 1002 0.3323 MSTSKKTTSDSSFKGYHETNQTQMCLSSLILQRNNNTLPNGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYSDTINFHTLVSSPLDLQVQVQQTLLTPSTQNNQNSTLFQLNTPHNTTTSRNDQNSSLMSTFDHEKTKNESSTHIHDENFFFTNETKNNSGYLECIVPDNCLRNSNVNVSGSSDEKVCNNVESNKFFMEGESHFGMASFSEEMPTRVSSFSEFSCYPSEISQGFLDWNSNELSAIFNNNPLRVEDECMDTLYPNYPNYVMMNDQSASSTNYSPSLEFGYPLF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04786 333 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Trre15g04786 333 MobiDBLite consensus disorder prediction 141 168 - -
Trre15g04786 333 FunFam Ethylene-responsive transcription factor 2 54 112 - -
Trre15g04786 333 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Trre15g04786 333 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre15g04786 333 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Trre15g04786 333 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 218 - -
Trre15g04786 333 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Trre15g04786 333 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Trre15g04786 333 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Trre15g04786 333 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04786 Trre-Chr15 58255924 58256925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04786 1 214 AP2-EREBP Transcription Factor Family AT5G18560 47.826 1.57e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g04786 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04786 - - cam:101500468 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04786 15 58255924 58256925 Trre3g00811 3 5691495 5692343 PCT