Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04772 ATGATGTTTATGCAGAAAGCAGTTGCTGTGAAACAGCTTAAGCAGAAAAGTTGTCAAGGTGATCGAGAATTTTTGGTGGAGGTTCTCATGCTTAACCTATTAAATCACAAAAATCTTGTGAACTTGGTTGGTTATTGTGCTGATGGAGATCAACGGCTACTTGTTTACGAGTATATGGCATTGGGGTCTTTAGACAAGCATTTACATGATCTTCCTCCTCGCGCAAAGCCACTAGATTGGAACACAAGGATGAAAATAGCATTGGCAACAGCAAAAGGATTGAAATATATGCATAAGGCAAATCCCCCTGTAATATACAGAGACTTAAAATCATCCAACATCCTCCTAGATGAAAATTATCAAGCCAAGTTATCAGATTTTGGGTTAGCAAAACTTGGACCAAGTGGTGATATGTCTCATGTAACCACTAGAGTAATGGGAACATATGGTTATTGTGCCCCTGAATATTTTATGACTGGACAACTAACTATGAAGTCTGATGTGTATAGTTATGGCGTACTCATGCTCGAACTTATCTCAGGACGTAGGGCTATCGATGATACACGTCCACAAGCAGAGCGAAGTCTTGTTGTTTGGGCAAAAACTCATTTTAAAAACCGTAGGAACTTTATCAAATTGGTTGACCCTCAACTTCAAGGTCGATATCCAATTGAAGGACTTTATCAAGCAGTTGCTATTGCAGCAATGTGTGTGCATACACAAGCTTCAGAAAGGCCTCACATTGGCGATATTGTGGATAGTCTTACATACATGACAAGAAGTGACACATCACCCCAATTGAGAAGAAGTTTGATGACTAAGTGA 825 0.3952 MMFMQKAVAVKQLKQKSCQGDREFLVEVLMLNLLNHKNLVNLVGYCADGDQRLLVYEYMALGSLDKHLHDLPPRAKPLDWNTRMKIALATAKGLKYMHKANPPVIYRDLKSSNILLDENYQAKLSDFGLAKLGPSGDMSHVTTRVMGTYGYCAPEYFMTGQLTMKSDVYSYGVLMLELISGRRAIDDTRPQAERSLVVWAKTHFKNRRNFIKLVDPQLQGRYPIEGLYQAVAIAAMCVHTQASERPHIGDIVDSLTYMTRSDTSPQLRRSLMTK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04772 274 Gene3D Transferase(Phosphotransferase) domain 1 60 270 - -
Trre15g04772 274 Gene3D Phosphorylase Kinase; domain 1 2 59 - -
Trre15g04772 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Trre15g04772 274 SMART serkin_6 5 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04772 274 PIRSF ILK 2 269 - -
Trre15g04772 274 FunFam Serine/threonine-protein kinase PBS1 59 272 - -
Trre15g04772 274 PANTHER OS07G0668900 PROTEIN 5 263 - -
Trre15g04772 274 SUPERFAMILY Protein kinase-like (PK-like) 6 253 IPR011009 -
Trre15g04772 274 Pfam Protein tyrosine and serine/threonine kinase 6 255 IPR001245 GO:0004672|GO:0006468
Trre15g04772 274 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04772 Trre-Chr15 58168108 58170686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04772 8 258 Glycoside Hydrolase AT3G07070 64.683 1.78e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre15g04772 PK_Tyr_Ser-Thr 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04772 - K13430 mtr:25494065 420.239