Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04758 ATGGAACGTTACACCAACAAGAATATTGATCCTTCACGTTCTGAAATGAATAACAGAAAACGTGGTAGAGAATTAAGTGCTACCACTACAACAAAAAGCGAAGAAACTCTTAACACAGAACGTGAAAGAAGGAAGAAAATGACTCAAATGTTCACTCAACTTAATACCATTGTCCCTACTCTTCGTCCCAATGCTACACATGAAGTGATTCTAACAAAAACAATTGAGTACATTAAGGAACTTGAGAAGAAGAAGAAAATGTTGGAAGAGCTGAAAGAATCAATGAAATTACCGGTTGAAGGGAATTTGTTGATTCCGTGTCGTAATAGGAATTGCTGCTCTGTATCTGTTACTGTTTCTAGCAATGTGGCCTTTTTTGGAATTGAATCAGTGGCTAAACCTGGTTTGATTACTGCGATTTTGAAGGTGTTTTTCAACAACCATGCTGAGATTTTAGCTGTTAATGTTTCTGTTAATGATGGAAATCTCATCTTGGCGATCACAGCTTTGGTTCAAAATAGTGCTACTATTGAGAAGGTTAAGAGAGAAATTATGAGTTTGTAG 564 0.3635 MERYTNKNIDPSRSEMNNRKRGRELSATTTTKSEETLNTERERRKKMTQMFTQLNTIVPTLRPNATHEVILTKTIEYIKELEKKKKMLEELKESMKLPVEGNLLIPCRNRNCCSVSVTVSSNVAFFGIESVAKPGLITAILKVFFNNHAEILAVNVSVNDGNLILAITALVQNSATIEKVKREIMSL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04758 187 SMART finulus 37 87 IPR011598 GO:0046983
Trre15g04758 187 CDD bHLH_SF 40 78 - -
Trre15g04758 187 Gene3D - 30 101 IPR036638 GO:0046983
Trre15g04758 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 81 IPR011598 GO:0046983
Trre15g04758 187 Pfam Helix-loop-helix DNA-binding domain 39 82 IPR011598 GO:0046983
Trre15g04758 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 98 IPR036638 GO:0046983
Trre15g04758 187 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 13 174 IPR044278 GO:0003700|GO:0006355|GO:0009960
Trre15g04758 187 Coils Coil 71 94 - -
Trre15g04758 187 MobiDBLite consensus disorder prediction 1 28 - -
Trre15g04758 187 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04758 Trre-Chr15 58098374 58099039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04758 39 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 45.098 1.04e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g04758 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04758 - - psat:127073348 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04758 15 58098374 58099039 Trre15g04758 15 58098374 58099039 ECH