Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04742 ATGGGAAGGCACCGAAGCCGTAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAACTCCACCACCTCGCGGTCGCAAGCGTTACGATGATGATCGCTATGGTGACACTCGCTCTCGCAGAGACCGCCGTTCTCCTCTTCCTTCTGGATTACTCGTTCGTAATCTCCCCCTTGATGCTAGACCTGAAGATCTTAGGGGACCGTTTGAACGCTATGGGCCTGTGAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCAGAGGCAAAGCAACAACTTAATCACTCTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAAGAAAATAGGAAGACACCTCAAGAGATGCGTGTTACTTCTCATGGAAGTAGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCCCCACGACGCCGTTATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGAGGATTCAAGGGATGACAGAGGTAGGGATGATGACTATTCTCCAAAGCGATCAAGATCTTATTCTAGATCTGTCTCTCCTGGTGGCACCAAGGATGATAGAAGGAGATCCCCTCGTGCCAAGGAGAATGGCCACAGTCCAAATGATAAGAAGGATCGGGCACCTAGCAGATCTCCGAGCCCCAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCTTACAGGTATGAATTTTCACATCCTTTTTAA 771 0.4929 MGRHRSRSRSYSPRRRSRTPPPRGRKRYDDDRYGDTRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHSIIGGREIRIVFAEENRKTPQEMRVTSHGSSRNGGGSRRRARSRSPRRRYRSYSRSPSPAREDSRDDRGRDDDYSPKRSRSYSRSVSPGGTKDDRRRSPRAKENGHSPNDKKDRAPSRSPSPRGNDRSPSRSRSRSYRYEFSHPF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04742 256 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g04742 256 MobiDBLite consensus disorder prediction 146 162 - -
Trre15g04742 256 MobiDBLite consensus disorder prediction 239 256 - -
Trre15g04742 256 Gene3D - 2 137 IPR012677 -
Trre15g04742 256 MobiDBLite consensus disorder prediction 126 256 - -
Trre15g04742 256 MobiDBLite consensus disorder prediction 166 190 - -
Trre15g04742 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Trre15g04742 256 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Trre15g04742 256 MobiDBLite consensus disorder prediction 200 231 - -
Trre15g04742 256 MobiDBLite consensus disorder prediction 23 46 - -
Trre15g04742 256 MobiDBLite consensus disorder prediction 1 50 - -
Trre15g04742 256 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 246 - -
Trre15g04742 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Trre15g04742 256 SMART rrm1_1 49 122 IPR000504 GO:0003723
Trre15g04742 256 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04742 Trre-Chr15 57981900 57984947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04742 21 110 Eukaryotic Initiation Factors Gene Family AT3G11400 39.560 4.31e-07 48.1