Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04741 ATGGGAAGGCACCGAAGCCGTAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAACTCCACCACCTCGCGGTCGCAAGCGTTACGATGATGATCGCTATGGTGACACTCGCTCTCGCAGAGACCGCCGTTCTCCTCTTCCTTCTGGATTACTCGTTCGTAATCTCCCCCTTGATGCTAGACCTGAAGATCTTAGGGGACCGTTTGAACGCTATGGGCCTGTGAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCAGAGGCAAAGCAACAACTTAATCACTCTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAAGAAAATAGGAAGACACCTCAAGAGATGCGTGTTACTTCTCATGGAAGTAGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCCCCACGACGCCGTTATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGAGGATTCAAGGGATGACAGAGGTAGGGATGATGACTATTCTCCAAAGCGATCAAGATCTTATTCTAGATCTGTCTCTCCTGGTGGCACCAAGGATGATAGAAGGTCGCCTCGTGCCAAGGATGACAGGAGATCCCCTCGTGCCAAGGATGACAGGAGATCCCCTCGTGCCAAGGAGAATGGCCACAGTCCAAATGATAAGAAGGATCGGGCACCTAGCAGATCTCCGAGCCCCAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCTTACAGTCCCCGCTGA 807 0.5105 MGRHRSRSRSYSPRRRSRTPPPRGRKRYDDDRYGDTRSRRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHSIIGGREIRIVFAEENRKTPQEMRVTSHGSSRNGGGSRRRARSRSPRRRYRSYSRSPSPAREDSRDDRGRDDDYSPKRSRSYSRSVSPGGTKDDRRSPRAKDDRRSPRAKDDRRSPRAKENGHSPNDKKDRAPSRSPSPRGNDRSPSRSRSRSYSPR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04741 268 MobiDBLite consensus disorder prediction 126 268 - -
Trre15g04741 268 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g04741 268 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 140 - -
Trre15g04741 268 MobiDBLite consensus disorder prediction 146 162 - -
Trre15g04741 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Trre15g04741 268 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Trre15g04741 268 MobiDBLite consensus disorder prediction 166 190 - -
Trre15g04741 268 MobiDBLite consensus disorder prediction 249 268 - -
Trre15g04741 268 Gene3D - 2 138 IPR012677 -
Trre15g04741 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Trre15g04741 268 MobiDBLite consensus disorder prediction 200 248 - -
Trre15g04741 268 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 253 - -
Trre15g04741 268 MobiDBLite consensus disorder prediction 23 46 - -
Trre15g04741 268 MobiDBLite consensus disorder prediction 1 50 - -
Trre15g04741 268 SMART rrm1_1 49 122 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04741 Trre-Chr15 57981900 57985499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04741 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 6.23e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04741 K12900 - gmx:100788749 246.128