Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04722 ATGGGTTGTGTTCATGGAAAGTGTTGCTGTATTGAAAATTCTTCATTGAATGGAGACTCTAGAAAACATGGCTTCCATCATAGCCATAGGAAGAATATACTTGCTCAGAGAGTATTGAAAAATGTTTCTGTTCCTTCCCATAACTTTGTTTTGGAATATACCTTTCTCACACTGCGAGGATACTACCCGGATTCGCTGGATAAACAGAACCAAGATAGTTTTTGCATTAGGACACAAATCCAAGGTAATCCTGATATCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAGTTTGGTAGTCAGTGTTCAAACTTTGTTAGGGATAGGTTGGTTGAAAAATTATCGAATGATCCTGCATTGGTGGAGGATCCTGTTCAAGCTTACAATTCTGCGTTCGCGGCAACAAATCATGAGTTGCATACTAGTGACATTGATGATGCTATGAGTGGTACAACAGCAATTACAGTGCTTGTTGTTGGAGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCTGTGATAGCTGTTAAAGATGGTGATCGGATTACCGCAGAGGACTTGTCGTCTGATCAGACACCATTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAGGATCCAAATATCCAGCATTGGGGTAACGAAGAGAGTTGGGATGGCGATCCTCCAAGATTGTGGCTTCCACATGGGATGTATCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGGTTGGCGGAGACAATTGGTGTGGTTGCTACTCCAGAGGTGTCAATAGTTCGGCTTACACCTAATCATCTCTTCTTTGTTGTTGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGACAGCGAGATATACAGATCCCCGCGATGCATGTGCCGCTATTACTGAAGAGTCGTATAAACTATGGTTGGAACTTGTGAATCGAACAGATGATATAACAATTATCATTGTCCAGATTAAAGGACTTTCTAATTCAAGTACATCTGGAGTTGAATTAAGTGAGGTCAATGCTGAGACTGCAACGAGAACCAAGACAGGAACTTCGGATACATCTGCTACCACTGAGTTTGATGTTTATCATTCTATGACAAACAGTTTCTCTGATTCACAATCCTGCCAGCATGTGGCTTCACTGAGTAGCCCGGGCACAGTTGTTTACTCTCAGTCATCTCAAAGATCAATTGAATCGGTATGA 1263 0.4173 MGCVHGKCCCIENSSLNGDSRKHGFHHSHRKNILAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDSFCIRTQIQGNPDIHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPALVEDPVQAYNSAFAATNHELHTSDIDDAMSGTTAITVLVVGDTLYVANVGDSRAVIAVKDGDRITAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWLPHGMYPGTAFTRSLGDRLAETIGVVATPEVSIVRLTPNHLFFVVASDGIFEFLSSQTVVDMTARYTDPRDACAAITEESYKLWLELVNRTDDITIIIVQIKGLSNSSTSGVELSEVNAETATRTKTGTSDTSATTEFDVYHSMTNSFSDSQSCQHVASLSSPGTVVYSQSSQRSIESV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04722 420 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Trre15g04722 420 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 47 344 - -
Trre15g04722 420 SMART PP2C_4 48 340 IPR001932 -
Trre15g04722 420 Pfam Protein phosphatase 2C 71 320 IPR001932 -
Trre15g04722 420 Gene3D - 51 344 IPR036457 -
Trre15g04722 420 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Trre15g04722 420 PANTHER PROTEIN PHOSPHATASE 70 341 IPR015655 GO:0004722|GO:0006470
Trre15g04722 420 CDD PP2Cc 68 342 IPR001932 -
Trre15g04722 420 SUPERFAMILY PP2C-like 40 344 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04722 Trre-Chr15 57841229 57843766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04722 1 347 PP2C-type Phosphatase Gene Family AT3G06270 68.876 8.88e-177 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04722 - - gmx:100797866 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04722 15 57841229 57843766 Trre15g04722 15 57841229 57843766 ECH
Trre15g04722 15 57841229 57843766 Trre3g00879 3 6182593 6185310 PCT