Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04716 ATGACTTCTTCTCCTCCAAACACCACCACTCCTCCTCCTCTCCCAGATCCACCAACCGCCGTCCCCCTCGCTCTCCCAGCTCCACTCCCTCTCCCTCCCCCTACCTCCACCCGCCGTCTCCCTCCTCCTTGCTGGTCCCCTGACGAAACCCTAGCTCTCATCGATTCCTACCGTGACAAATGGTATTCTCTTGGTCGTGGTAACCTAAAAGCCACTCACTGGCAAGAAGTTGCTGACGCTGTTTCTCAGCGTTGCCCTAACGCTTCTCCGTCTAAAACTCCCGTTCAATGTCGTCACAAGATGGAGAAGCTTCGTAAGCGTTATCGTACTGAGATTCAACGTGCTCGCTCGCTTCCTGTCTCTAGATTTAACTCCGCTTGGGTTCACTTTAAGCTTATGGATTCTATGGAAAAAGGTCCTTCTCCTGTTAAATCTGAAAACAACGATTCCGATACCGATGATGATGACGAAGAAGAAGATCGAGATCAGGATCTGTATATGGATATCAAAAACGGTCACGGATCTAATACTAGAAGCATCAATAAGTTGTACAAAAACGGTTTCGCTGGAAGTGGCGGTGTTGGTGTTGGTGTTGGTGTTAGTGGAGGGTTTAGGATTAGGTATCCACCGGCACAACCTGAATCGAAGTTTTTCCCTGATCAGAAATATAACCCTAATCTTAATCAAAACTATGGGATGCCACCGACAGCATCAACCACGAAGGGGATGGGGAACAAGAGGGAGAGAGATCCATTGGGAGAGGTTGTGTCTGCTATTAAAGTATTGGGTGATGGATTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCGAGGGAGATTGAAGCTATGAGGATGGAGATGGAAATGAAGCGAACTGAGATGATTCTCGAATCTCAACAGCGAATTGTGGAGGCATTTGCGAAAGCCATTTCCGATGATAGCAACAACAACAAGATGAAGCCTATTAATAAGAGAATTCCCTCACCACAACAACCATAA 999 0.4725 MTSSPPNTTTPPPLPDPPTAVPLALPAPLPLPPPTSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSQRCPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSAWVHFKLMDSMEKGPSPVKSENNDSDTDDDDEEEDRDQDLYMDIKNGHGSNTRSINKLYKNGFAGSGGVGVGVGVSGGFRIRYPPAQPESKFFPDQKYNPNLNQNYGMPPTASTTKGMGNKRERDPLGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILESQQRIVEAFAKAISDDSNNNKMKPINKRIPSPQQP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04716 332 Gene3D - 45 110 - -
Trre15g04716 332 SMART 118neu2 52 141 IPR006578 -
Trre15g04716 332 MobiDBLite consensus disorder prediction 226 242 - -
Trre15g04716 332 MobiDBLite consensus disorder prediction 136 161 - -
Trre15g04716 332 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 313 IPR044823 -
Trre15g04716 332 Pfam Myb/SANT-like DNA-binding domain 43 136 IPR044822 -
Trre15g04716 332 MobiDBLite consensus disorder prediction 1 41 - -
Trre15g04716 332 ProSiteProfiles Myb-like domain profile. 45 105 IPR001005 -
Trre15g04716 332 MobiDBLite consensus disorder prediction 310 332 - -
Trre15g04716 332 MobiDBLite consensus disorder prediction 1 43 - -
Trre15g04716 332 MobiDBLite consensus disorder prediction 226 246 - -
Trre15g04716 332 FunFam Trihelix transcription factor ASIL2 45 110 - -
Trre15g04716 332 Coils Coil 98 118 - -
Trre15g04716 332 Coils Coil 273 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04716 Trre-Chr15 57808077 57809075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04716 44 136 Trihelix Transcription Factor Family AT3G14180 36.559 3.24e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre15g04716 Myb_DNA-bind_4 4.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04716 - - mtr:25494055 483.411