Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04685 ATGTACAATGCTGAGAAAAGAGGAAAGCGTCAAGTCATGATTAGGCCTTCCTCTAAAGTCATCATCAAGTTTCTTATTGTGATGCAGAAACACGGTTACATTGGTGAGTTTGAGTATGTTGATGATCATAGAGCTGGGAAAATCGTTGTTGAATTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTTGGTGTTAAGGAGATTGAAGGTTGGACTGCTAGACTTCTTCCTTCCAGACAGTTTGGTTACATTGTTTTGACCACTTCTGCTGGCATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAGGTCCTAGGATTCTTCTACTAA 354 0.4011 MYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04685 117 Gene3D - 57 117 - -
Trre15g04685 117 Pfam Ribosomal protein S8 2 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre15g04685 117 FunFam 40S ribosomal protein S15a 57 117 - -
Trre15g04685 117 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre15g04685 117 Gene3D - 1 56 - -
Trre15g04685 117 FunFam 40S ribosomal protein S15a 1 56 - -
Trre15g04685 117 SUPERFAMILY Ribosomal protein S8 2 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre15g04685 117 ProSitePatterns Ribosomal protein S8 signature. 87 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04685 Trre-Chr15 57553444 57554791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04685 1 117 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 99.145 1.66e-84 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04685 K02957 - thj:104810027 238.81