Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04678 ATGCAGTTGATTTCTACCTCCACCACTCTTCGCAATGCGCCTTTTCCGTTCTTCTGCTCCACCTCCACCTCCACCTCTTCTGTCGAAACTAATAATATGCCTTCTTCAACAAAAATCTTCATTAAAGGACTTCCTCTCGCCACCTCTGAAGTGCAGTTAATGGAATTGTTTTCAGTGTTTGGTGAAGTTACTCAAGCCAAGCTTTTGATAGATAAGGAATCTGGGAAGTCTCTAGGGTTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCGCAATTGGCTGCAAAAAAGATGAATGGAAAGTTTTTTTTTGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAGTTCGAAGAAGACAACAGCCTACAAATTTTAA 390 0.3974 MQLISTSTTLRNAPFPFFCSTSTSTSSVETNNMPSSTKIFIKGLPLATSEVQLMELFSVFGEVTQAKLLIDKESGKSLGFAYIWFVKEESAQLAAKKMNGKFFFGRFIYVTIAKPGSSKSSKKTTAYKF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04678 129 SMART rrm1_1 38 111 IPR000504 GO:0003723
Trre15g04678 129 Gene3D - 19 127 IPR012677 -
Trre15g04678 129 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 29 124 - -
Trre15g04678 129 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Trre15g04678 129 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Trre15g04678 129 SUPERFAMILY RNA-binding domain, RBD 30 119 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04678 Trre-Chr15 57487036 57489727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04678 39 115 Eukaryotic Initiation Factors Gene Family AT3G11400 38.961 2.07e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04678 - - psat:127073405 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04678 15 57487036 57489727 Trre15g04678 15 57487036 57489727 ECH