Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04677 ATGAATATATTTTCGGGTGCTGTTTCTTGCAAACCCCTAGTGAGTTTCCAACCAGCACTAATGGATAATAACAATTCATTGTTTCAACAAAAACATCGTAATCGTAATAACAATAAAGAGAAAGTTATTGTTATCATGGGTGCTACCGGAACCGGGAAATCCAAGTTGGCAATAGATATAGCAACACATTTTTCACCGGCTGAGATTATCAACTCCGATAAAATTCAAGTTTACAAAGGACTTGATATAACAACAAATAAAGTTACCGATGAAGAGTGTCGTGGGGTCCACCATCATTTACTTGGAACCGTTGATCCTAATTTGAGTTTCACATCCAACGACTTTTGCGAACATGCCACGGAAAAAGTTGATTCTATTGTTTCAAGAAATGGGTTACCTATTATAGCCGGTGGATCAAATTCGTACATTGAAACTTTGGTTAATCATTATCCTGAGTTTCGTACAAGGTACGAATGTTGTTTTCTTTGGGTTGATGTTTCATTTCCCGTGCTTCATTCGTCGTTATCCGCACGAGTTGATCGTATGATTGAAGCTGGTCAAGTCAATGAAGTTCGTGAGTTTTTTGACGAAAATGATCGTGATTATACGAGAGGGATACGAAGAGCCATTGGTGTCCCGGAATTTGATGAATTTTTTAGAGCTGAGTTGGAAGGAAGTGTTGATGAAAGAACCATGAAGATGCTTCTAGAAGTTGCTATTGATGCTCTTAAGATGAATAATATTAAGCTTGCAAATAGACAAGTTTCGAAGATTCGTAGGCTTTATGGTATGTGGAAAAGAAACATGCATCGTCTTGATGCTACGGATGTTGTTCTTAAGGAAAGGAATTGGGAGGATTGTGTTTTGGCTAAGAGTCTTAGGATTGTTCATAAATTTCTATACGAGGATAGTTACAATTCTCGTGTTGGTGTTGGTGGTGGTTGTGGTGTTGGGTCATCAATCGCTTCCTCGAGTGTGGCGGCAGCAGCAACCCATTAG 999 0.3894 MNIFSGAVSCKPLVSFQPALMDNNNSLFQQKHRNRNNNKEKVIVIMGATGTGKSKLAIDIATHFSPAEIINSDKIQVYKGLDITTNKVTDEECRGVHHHLLGTVDPNLSFTSNDFCEHATEKVDSIVSRNGLPIIAGGSNSYIETLVNHYPEFRTRYECCFLWVDVSFPVLHSSLSARVDRMIEAGQVNEVREFFDENDRDYTRGIRRAIGVPEFDEFFRAELEGSVDERTMKMLLEVAIDALKMNNIKLANRQVSKIRRLYGMWKRNMHRLDATDVVLKERNWEDCVLAKSLRIVHKFLYEDSYNSRVGVGGGCGVGSSIASSSVAAAATH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04677 332 Pfam IPP transferase 76 153 - -
Trre15g04677 332 Pfam IPP transferase 155 259 - -
Trre15g04677 332 FunFam Adenylate isopentenyltransferase 5, chloroplastic 168 269 - -
Trre15g04677 332 Gene3D - 39 300 IPR027417 -
Trre15g04677 332 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 39 300 IPR039657 -
Trre15g04677 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 202 IPR027417 -
Trre15g04677 332 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 168 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04677 Trre-Chr15 57461316 57462527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04677 155 313 C2H2 Transcription Factor Family AT2G27760 29.570 3.42e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04677 K10760 - gmx:100812928 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04677 15 57461316 57462527 Trre3g00917 3 6549605 6552993 PCT