Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04669 ATGGGTGGTTCATGGAGTAACGGTAATAACAGGAACACAAGAAGAAGAAGAAACAGTTACCATGAACACTATCCACAACCACCACCTCCTCCTCCAACATACTATTATCATTATTCTTCTCAGCCTCTTATGCCACAACCACCTCAAGGTTACTTTCCTCCTCCTCCTCCTTCTCTTCCTCATCATCAGTACTACTCAAATGGATACAATCCTCAGTTTCAGAATCATCATCCTTCTTTCCATGCAACAACTAATACTCAACCATCTGATGTAGATTTGAATGTAAATGTTGCTCAACCTCTACCACTTCCACCACCACCTTCTTATGTTGATCATGAAACCACTAAGAAAGTAAGGAATGATGTTAACTTGCATAAACACACTCTTCAGCTCCATCTTGATCCTAATAATCCCCATCACTACTTGATTTCCTTCGATTTCGATGCCCTTTTCGATGGAAGAATTACGATCTTCTACTTAGCCAAAGAAGAAGAACATAAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAACCGATCACATTCCCATTCGAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGATTTCGGTTTCTTTGAGTTGGACGATATTTCAAACCATTCACCTGAAGAAGATGTATTTCCCCTCGTAATATGTGCCGAAACAACCCCTTTGGAAGATCATGAAAATCCTGCTACTTCCTTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAATCGATGGCAATGGTCCTTTCCAGGTTAAAGTTATTAGGCAGATTCTATGGATCGATCAAGTTCGTTATGAGCTAAGAGAGTTATATGGAATTGGTAACTCAACAGCACCTGATTTCGATCGCAACGATCCTGGAAAGGAGTGCGTAATATGCATGACTGAACCCAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGTGAGTGTGCAAAAGCATTGCTGTTACAATCAGATAAATGCCCTATATGCCGCCAAGCTATCGAGGAACTTATAGAGATCAAGATAAACAATGGCGACCAATGA 1086 0.4116 MGGSWSNGNNRNTRRRRNSYHEHYPQPPPPPPTYYYHYSSQPLMPQPPQGYFPPPPPSLPHHQYYSNGYNPQFQNHHPSFHATTNTQPSDVDLNVNVAQPLPLPPPPSYVDHETTKKVRNDVNLHKHTLQLHLDPNNPHHYLISFDFDALFDGRITIFYLAKEEEHKCRFVPLFPEAFEPITFPFEKGVGQKFCQPSGTGIDFGFFELDDISNHSPEEDVFPLVICAETTPLEDHENPATSLVDASPHMQITQAVLEKIDGNGPFQVKVIRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALLLQSDKCPICRQAIEELIEIKINNGDQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04669 361 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Trre15g04669 361 SMART ring_2 306 344 IPR001841 -
Trre15g04669 361 FunFam probable E3 ubiquitin-protein ligase LOG2 290 355 - -
Trre15g04669 361 PANTHER MAHOGUNIN 1 355 IPR045194 GO:0061630
Trre15g04669 361 MobiDBLite consensus disorder prediction 1 66 - -
Trre15g04669 361 MobiDBLite consensus disorder prediction 46 61 - -
Trre15g04669 361 SUPERFAMILY RING/U-box 305 351 - -
Trre15g04669 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 355 IPR013083 -
Trre15g04669 361 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Trre15g04669 361 CDD mRING-HC-C3HC5_MGRN1-like 304 345 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04669 Trre-Chr15 57405145 57406912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04669 109 361 C3H Transcription Factor Family AT3G06140 58.661 2.02e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04669 - - psat:127073410 531.946