LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04659	ATGTTTCGCAAACATTTTGCTATCTTCCTTCTCTTCCTCTCTCTCACATCTGCTGCAGATGCCACTTCCTGGGTAAAAGCAGGTTATTACTATTCAGGCAGTGAAATTTCAGCTTCAGACATTAAATCAACACTCTTCACACATCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAATTACAACATCTTCATAAACTCTTCTGAGCAACACAAATTCTCCATCTTCACTGACACAGTAAAGCTTCAAAATCCATCTGTTATAACTCTGCTTTCAATCTACACTGGAAAAGAAAACTCTTCACTTTTTGACTCAATGATAAACCAATCTTCTTACAGAAAATCTTTTATTGATTCTTCCATTATTACAGCAAGAAAATATGGATTTCATGGCATAGACCTTTGTGGTGTCTTACCAAAACAGGGTATAGAACTTGCAAATTTGGCAACCCTTTTGAAAGAGTGGCGAATTGCGATTACTTCTGAAGCAAGAAACAGTAAAAAATTAGAGTTGGTGTTAGTGATGGCTGGTTATTACATCAAAGCTTCAGATTCCATTAATTACCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTTCATTTTGTTGCATATGATTATTATCTTCCTAAAAGGGACAGTGTCTCAGGTTTTCATGCAGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAATGGAGAAAAAGAGGATTTTCTTCTAACAAACTTGTAATTGGTTTGCCTTATCATGGATTTGCATGGACACTTGCGAAACCAGCTATTGAAGGTGATTTTGGAAAACTAGCTTCTGGACCTGCTATTACATTGGATGGTTCAATGGCTTATAAGTTGATAAAAGGTTATTTGGACCTGGTACGTTATAATGATACTTTTGTGGTGAATCATATCACACTTGCTTCCACTAATTGGATTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCCAAGGCAGCTTATGAAGTACATGAAGATCATCATAACAAAAAGTTGCTGATTATTGTTCTGCTTACTACTCTGACTATTTCACTTCTCTTGGGAGTAATAGCATTTTCCTACTACCACCAAGGAACAGTGACCGCTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGGAAGTGGTTCTGATTTAATAGTATTTAGCTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGCTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACAGAAGGGAGAGGAAATAGCAGTCAAAAGGCTATCAGAAACCTCAAATCAAGGAATTGAGGAGTTCAAAAATGAGATCGCGCTTACAGGAAGACTTCAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTCCCAAACAAAAGCTTAGATCATTTTCTCTTGGATCCAAGGAAATCAATTCTTCTAGATTGGAAGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGTCTTCTTTATCTCCAAGAGTACTCAAATTTCACTATAATCCACCGTGATCTTAAAGCTAGTAACGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTTTTGGGAAATATGAACTTGAAGCAAACACAAGCAAGATCGTGGGAACATATGGGTATGTACCCCCTGAGTACGTCAAAAAAGGCATATACTCTCCCAAGTACGACGTTTATAGTTTTGGAGTCCTTCTCTTGCAAATCATTAGTGGAAAGAGAACTTCACGTTATTACGGTCCACATGAAAATATGAACCTTTTGGAATACGCATATGAGCTATGGATGGAAGGAAGTGGTGCGGAGTTTTTCGACCCTTCATTAGATGATACAACATCACCTTGCAAAATAATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAACGAAAGTACAATTGTTGGTACTCCAAATGTGCCCGCTTTTTCAATGAAGAAACACGAAGACAACAATGGAGATACTTCTAACTATGGGTTCAAATTTTCTTCAGTCAATGATGTTACAATTTCTCACATGCTACCAAGATAA	2277	0.3654	MFRKHFAIFLLFLSLTSAADATSWVKAGYYYSGSEISASDIKSTLFTHLLCAFAFINSTNYNIFINSSEQHKFSIFTDTVKLQNPSVITLLSIYTGKENSSLFDSMINQSSYRKSFIDSSIITARKYGFHGIDLCGVLPKQGIELANLATLLKEWRIAITSEARNSKKLELVLVMAGYYIKASDSINYPFESMQKNLDWVHFVAYDYYLPKRDSVSGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGFAWTLAKPAIEGDFGKLASGPAITLDGSMAYKLIKGYLDLVRYNDTFVVNHITLASTNWINFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEVHEDHHNKKLLIIVLLTTLTISLLLGVIAFSYYHQGTVTAITRMIYKLRIYLSAAEEDLNGSGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLQKGEEIAVKRLSETSNQGIEEFKNEIALTGRLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPRKSILLDWKKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFGKYELEANTSKIVGTYGYVPPEYVKKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYAYELWMEGSGAEFFDPSLDDTTSPCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNESTIVGTPNVPAFSMKKHEDNNGDTSNYGFKFSSVNDVTISHMLPR	758

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04659	758	Gene3D	Glycosidases	39	349	-	-
	Trre15g04659	758	SUPERFAMILY	Protein kinase-like (PK-like)	422	716	IPR011009	-
	Trre15g04659	758	SMART	2g34	24	347	IPR011583	GO:0008061
	Trre15g04659	758	ProSitePatterns	Protein kinases ATP-binding region signature.	445	467	IPR017441	GO:0005524
	Trre15g04659	758	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	24	363	IPR001223	GO:0005975
	Trre15g04659	758	FunFam	Uncharacterized protein	515	719	-	-
	Trre15g04659	758	FunFam	Uncharacterized protein	415	514	-	-
	Trre15g04659	758	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	560	572	IPR008271	GO:0004672\|GO:0006468
	Trre15g04659	758	CDD	STKc_IRAK	445	712	-	-
	Trre15g04659	758	Gene3D	Phosphorylase Kinase; domain 1	406	514	-	-
	Trre15g04659	758	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	337	754	-	-
	Trre15g04659	758	Gene3D	Transferase(Phosphotransferase) domain 1	515	719	-	-
	Trre15g04659	758	Gene3D	-	254	318	IPR029070	-
	Trre15g04659	758	Pfam	Glycosyl hydrolases family 18	29	347	IPR001223	GO:0005975
	Trre15g04659	758	ProSiteProfiles	Protein kinase domain profile.	439	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04659	758	SMART	serkin_6	439	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g04659	758	SUPERFAMILY	(Trans)glycosidases	27	352	IPR017853	-
	Trre15g04659	758	Pfam	Protein kinase domain	440	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04659	Trre-Chr15	57297539	57302213	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g04659	427	758	Receptor kinase-like Gene Family	AT4G11530	51.775	6.66e-114	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g04659		Glyco_hydro_18	5.4e-47	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04659	-		-	tpra:123922687	1324.69