Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04654 ATGTCGTCCGATAATAATCTATTTGAAGACCTTAAGAAAGAGAATGTTGATCTTGAAAATATTCCAATTGAGGAAGTTTTCAAGCAGCTAAAATGTAGCAGAGAAGGTCTAACATCAGCTGAGGGAGAGAATAGGCTACAAATATTTGGTCCTAACAAGTTAGAGGAGAAAACAGAAAGCAAGTTCCTTAAATTCTTAGGTTTTATGTGGAATCCACTATCATGGGTTATGGAAGCTGCTGCTGTTATGGCCATTGCATTGGCCAATGGAGGGGGAAAACCGGCGGATTGGCAAGATTTCGTTGGTATTGTTGTGTTGCTCATCATCAACTCAACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCTGCAGCAGCTTTAATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGAGATGGAAAATGGACTGAGCAAGAGGCAGCAATTTTGGTGCCAGGAGATTTGGTGAGCATCAAGTTGGGAGACATTGTCCCAGCCGATGCTCGTCTCTTGGAAGGAGATCCCCTTAAGATTGATCAATCTGCACTTACTGGCGAGTCACTTCCAGTCACCAAGAACCCCGGTGATGAAGTCTTCTCTGGTTCAACCTGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACCGGTGTCCATACCTTCTTTGGAAAGGCTGCTCACCTTGTTGATAGCACCAACAATGTTGGTCACTTCCAAAAGGTGCTGACATCAATCGGAAACTTTTGTATCTGCTCCATTGCAATAGGAATGTTGATTGAGATAGTTGTGATGTACCCTATCCAAGAAAGACCATATAGAGAAGGTATTGACAATTTGTTGGTTCTTCTCATCGGAGGTATCCCAATTGCCATGCCAACGGTTTTGTCCGTGACAATGGCTATTGGGTCTCACCGTTTGTCTCAACAAGGAGCTATCACCAAGAGGATGACAGCTATTGAGGAAATGGCTGGCATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACTCTTAACAAGCTCACTGTTGACAGAAACTTGATTGAGGTGTTCACCCCTGGTGTAGACAAGGACGGTCTTCTCTTGGCCGCTGCTAGGGCTTCTAGGGTTGAAAATCAGGATGCTATCGATGCTTCAATCGTTGCAATGTTGGGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCCGTTGGTAAACGCACAGCTATTACCTACATTGATGGTGAAGGAAATTGGCACAGATGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGAACTCAAGGGAGAGACATTGAAAAAGGCCCACAAAGTCATTGATCAGTTTGCTGAACGAGGTCTGCGCTCATTGGCTGTTTCTCGCCAGACTGTTTCGGCAAAGACCAAGGAGAGTGAAGGAGACACGTGGGAGTTTTTGGGTCTCATGCCACTCTTTGACCCTCCAAGGCATGACAGTGCTGAGACTATTCGACAAGCTCTTGACCTTGGTGTTAATGTTAAGATGATCACTGGTGACCAGCTTGCCATTGGAAAAGAAACCGGTCGCAGACTCGGAATGGGAACCAACATGTATCCTTCATCCTCTCTTCTTGGTGATAACAAGGACCCTGATATTGCATCAATCTCAATTGACGAGCTCATTGAGAAGGCTGATGGATTCGCCGGAGTCTTCCCTGAACACAAGTATGAGATTGTGAAGAGGTTGCAAGATAGAAAACATATCTGTGGTATGACTGGCGATGGTGTGAATGATGCACCTGCATTGAAGAAAGCCGACATTGGTATTGCTGTTGCCGATGCAACTGATGCTGCAAGAAGTGCATCTGACATTGTTTTGACAGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACTAGTAGAGCCATCTTCCAAAGGATGAAAAACTACACAATCTATGCTGTCTCTATCACCATCCGTATTGTGTTCGGATTCATGCTTGTTGCTTTGATATGGAAGTTTGATTTCTCACCTTTCATGGTCCTCATTATCGCCATCTTGAACGACGGAACCATCATGACCATCTCTAAGGATAGGGTGAAACCGTCACCAGTTCCTGATTCATGGAAGCTCAAAGAAATCTTTGCCACCGGAATTGTTCTTGGATCTTACATGGCCATCATCACTGTTGTGTTCTTCTATTTAGTTCATGACACCGATTTCTTCACCAAAGTTTTTGGTGTGCATCCAATTTCAGACAGTAATGATCAACTTAACTCGGCTTTGTATCTTCAAGTAAGCATTATTAGTCAAGCACTAATCTTTGTGACAAGGTCAAGGAGTTGGTCTTATGTCGAACGCCCTGGCTTGTTGCTTCTCGTTGCTTTCTTTGCTGCACAGATGGTGGCAACTCTCATTGCTGTGTATGCACACTGGGGATTTGCTAGAATCAATGGAATTGGTTGGAGATGGGCTGGAGTCATCTGGATCTTCACCATTGTTACTTACATTCCTCTTGACATCCTCAAATTCGTCATCCGTTTGGGATTGTCAGGCAGGGCCTGGGACAACATGATTGACAATAAGACTGCTTTCACAACAAAGAAGGACTATGGAAGAGGAGAAAGGGAGGCACAATGGGCTACGGCTCAACGCACACTCCATGGTCTCAAAGTTGCAGACTCTAGGAGCAACAGCACCCATCATGAACATTCGGAAATGGCTGAACAAGCCAAGAGACGCGCTGAGGCTGCTAGGCTCAAAGAGCTCCATACACTGAAAGGACATGTTGAATCTGTGGTGAAGTTGAAGGGTCTTGACATTGACACCATCCAACAACACTACACACTCTAA 2850 0.4502 MSSDNNLFEDLKKENVDLENIPIEEVFKQLKCSREGLTSAEGENRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPADWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDLVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLIEIVVMYPIQERPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFTPGVDKDGLLLAAARASRVENQDAIDASIVAMLGDPKEARAGITEVHFLPFNPVGKRTAITYIDGEGNWHRCSKGAPEQIIELCELKGETLKKAHKVIDQFAERGLRSLAVSRQTVSAKTKESEGDTWEFLGLMPLFDPPRHDSAETIRQALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDNKDPDIASISIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGIVLGSYMAIITVVFFYLVHDTDFFTKVFGVHPISDSNDQLNSALYLQVSIISQALIFVTRSRSWSYVERPGLLLLVAFFAAQMVATLIAVYAHWGFARINGIGWRWAGVIWIFTIVTYIPLDILKFVIRLGLSGRAWDNMIDNKTAFTTKKDYGRGEREAQWATAQRTLHGLKVADSRSNSTHHEHSEMAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04654 949 MobiDBLite consensus disorder prediction 892 912 - -
Trre15g04654 949 PANTHER CALCIUM-TRANSPORTING ATPASE 19 885 - -
Trre15g04654 949 FunFam Plasma membrane ATPase 483 638 - -
Trre15g04654 949 Coils Coil 900 920 - -
Trre15g04654 949 CDD P-type_ATPase_H 36 843 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre15g04654 949 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Trre15g04654 949 FunFam ATPase 4 plasma membrane-type 575 817 - -
Trre15g04654 949 Pfam E1-E2 ATPase 133 310 - -
Trre15g04654 949 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 Gene3D - 328 627 IPR023214 -
Trre15g04654 949 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Trre15g04654 949 SFLD Haloacid Dehalogenase 313 642 - -
Trre15g04654 949 Gene3D - 134 218 - -
Trre15g04654 949 NCBIfam HAD-IC family P-type ATPase 565 676 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 NCBIfam HAD-IC family P-type ATPase 103 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g04654 949 FunFam Plasma membrane ATPase 343 490 - -
Trre15g04654 949 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 808 IPR006534 GO:0008553|GO:0016020|GO:0120029
Trre15g04654 949 FunFam Plasma membrane ATPase 134 218 - -
Trre15g04654 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Trre15g04654 949 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Trre15g04654 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 847 IPR023298 -
Trre15g04654 949 Gene3D - 343 490 IPR023299 GO:0000166
Trre15g04654 949 Gene3D - 96 817 - -
Trre15g04654 949 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Trre15g04654 949 SFLD p-type atpase 313 642 IPR044492 -
Trre15g04654 949 SUPERFAMILY HAD-like 324 644 IPR036412 -
Trre15g04654 949 Gene3D - 898 949 - -
Trre15g04654 949 MobiDBLite consensus disorder prediction 894 912 - -
Trre15g04654 949 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04654 Trre-Chr15 57274936 57279725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04654 8 949 Primary Pumps ATPases AT3G42640 84.183 0.0 1622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04654 K01535 - gmx:100798717 1651.72