Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04649 ATGCCGGACGGAGAATCATCCACCGCCGTTACTGATCAGTTTTCTGATCAAGGGAACTCATTGAGTCTTTCCACAGTCAAAAACCATGATGACTCTGTCATAAAAGATCCTACCAAAATTGCAAGAAAGTATCAATTGGCTTTATGCAAAAAAGCTATGGAGGAAAATATAATTGTTTATTTGGGGACAGGATGTGGGAAGACACACATTGCTGTGCTGCTTATGCATGAAATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCGACTGTTGCTTTAGTTCATCAGCAAGCAAAGGTTATATCCGACTCTACTGATTTTGAAGTTGGAACTTGCTGCGGGAGTAACAAGCGCTCCAAATCTCATCAACACTGGGAGGAGGAGATTGAACAATTTGAGGTTCTTGTTATGACCCCGCAAATATTACTCCACAATTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGCCAAAAGCAGCCATCCTTATGCAGAAATCATGAAGGTCTTCTATAAAAGCAATTCCACAAAAGTTCCCCGCATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGAAGCAAATCTACCAAAAAGCATCAACAGTCTTGAACTAATCCTTGATGCTAAGGTATACTCAGTTAAAGACGAGGCATTGAAAGCTTTTGTGACCACTCCTGAAGTTAATATATATCATTATAGTTCGACCACAAATATGGAAACTAGCTTGGAGTGGAAACTTGAGGAGTTTAAATGCCAGTGCACAGAAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAACCGCGTACATGATAATGTGGTCTTCTGTCTCAGGAGTCTCGGCTTTTGGGGAGCTTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCGTTCCGAGAGGCATGCATTAGTTGAGGCAGAAGGAATTTCAAGCGACGAGTCTGTATGTGATAAATATCTTGCTAAGACAGCTGAACTATTTCATTCAAAATGCGGCAGTGTTTCTGATCCATCTTCCTGGGAAATATTAAAAGAGCCTTTTTTCTCAGCAAAGCTATTACGCCTCATTGGGATACTGACCACTTTCAGGTTACAACAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACCGCAAGAGCTCTGTCATACATACTACGGCAGCTCGAGCTTCTAAGACACTGGAAGAGTGATTTTCTTGTAGGAGTCCATTCTGGAGTGAAGATTATGTCACGGAAGGCCATTAATATGATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCCACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTAGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCGTTCAGAATATGCATTTTTAGTTGACAGTGGCAATGAGAAGGAATTAGACATAATTGCTGGTTTTGAGAAAGATGAATTTCGAATGAATACGGAAATTACTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAAATATTCAAAGTTGAATCATCTGGTGCCTCAGTCAGTGCTGCATATAGTATCCAATTGCTTCACCAGTATTGTTCAAAGCTTCCACGTGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTTCAATACACCAAATTGTCAGTACGCCACAGTTGTCTTTGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTGCTTTGAATGACTGTCTCTTGCCAAGGCAAAATGATACAGGGACAGAGAAGGTTTCGGGCTCTTCTGATTCCGATGACTGTGAAGATGACCATTCAAGAGGGGAGTTACATGAGATGCGAGTTCCTTCTGTCTTTAGACAGTCATGGAAAAATGAGCAGAAAACTGTCCGTCTCAACTCATACTACATTAAATTTTGCCCTACTCCAGAGGATAGGGTCTATAAAAAGTTTGGTTTATTCATCATGACTCCTCTTCCAATGGAGGCTGAAGAACTGGAACTTGATCTTCATCTTGCTCGCAGTAGATCTGTGATGACAAAATTTATGCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCTGAGAATTTTCAAGAAATGTTCCTTAGAGTTATCCTTGATAGATTAGAGTTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCTTGCACAAACACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATACGATGATGTGATGAAAGTAGATTGGGAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGTTGATACTTTGAATAAAAAGGTTACCCCTTTGGATAATCATCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGTTCCACATACAAAGTTCTTCTATTGTGTCACAAATATTATCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAAACACTTCAAACTACGCGGACCACTTCAATGAAAAGTATTCCATTAATCTCAAAAGCCCCGAACAACCACTTCTGCATGCAAAACAACTTTTCAATTTGCACAACCTGCTACACGATCGAAAGAATGAGGATGCTGAAGAACCTCATGAGCTAGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGTAGTTCCATATCTTTGCTACCTTCAATTATGCATCGTCTCGGAAACTTGCTGGTTGCCATTGAACTGAAGCAGCAGCTATCTTCCTCCTTCCCAGAGGCAACGGAAATTAGTGCCCATAGATTTCTAGAAGCTCTCACCACCGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGACGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGATCCAATGTTGTAAATAATTCCAATTTGCTTAAGTTGGCTATTAGGCGCAATTTGCAGGTCTATATACGTGATCAAGCATTTGATCCATTACGGTTCTATGCATTAGGCCGTCCTTGCCCTACAGTTTGTACCAAGGAAAATGAAGACAACATACACTTAGGTTTAACTTCTGTTGAGGACAAAAGTAGTGCAAGTGCAACTGATATCCGATGTAATAAAAATCACCATTGGCTGTATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTGGGGGCATTCATCGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTGCATGGATTGGCATAGAAGTAAATTTTGAAGCCTCACAACTTGTTAATATTTGCACCGCGAGTGTTGGCTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCACGGAGGAGGATGTTATCAGAGATTGGAGTTCCTTGGGGATGCTGTTTTAGATTTTCTAATTACGTCGTATCTATATTCAGCATACCCCAATCTAAAGCCCGGCCAACTGACAGATCTGAGGGCATTGTCTGTCAATAATAAGGCATTCGCCTGTGTGGCCGTGGAACGCTGTTTTGATCAATATCTTCTGTGTGATTCAAAAGAACTGAGCAAGGCAGTCAAAAGGTATGTGGATTACATCAGAAGATCTGTATCAGACAGTGGCAATGATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTTGATTTGAACGAAGTTTGGAAGATCATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTGTGCCAATTTAATAGTTTGGAATTGCAGCTTCTGGAATCAAAACAAGGTAAAAAGTTTTCAGTTGATGTCAAAGTGATTGGGGACAATGTCTGTGAAAAAGTTTGTATCACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCCTCACAGCTACTTTTTTCAAAGTTGAAGGCTCAAGGCTTGAAATTGAAGTCCAAAACTTTGGAAGATGTTCTGAAAACAACATTTAAGGCGGAACCAAAACTGATTGGCTATGATGAAACCCCCATTGATGTAACGGATACGACCACCATTGGACAGGAAATGGTTAATGGAGATCTATGCGACAATTCTAATCCAGAAATCTTCCGTATCCGGGAGGTATCTGATGCACAGTCCTCGTGTGTGAAACCTGTCGCCCAATGGCTTCAATCTTCTCCTAAGGAAAAGCTTGGTGAAACCAGTCGAAATCGTGATTGTGGCAGTGACTCATCAAAGACAGGAAATGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTTTATTTGAATGCTGCAAGGAAGAGGGACCAGCCCACCTTAAGTTATTCACGTGCAAGGCAACGATGGAGATAGAAGAGGCGTCAGGTATGGTTTTCGAGTTTATTGGGGAACCTCTACCAAAGAAGAAAGATGCCGCAGATAGTGCAGCTTCGGCTGCATTTTGGTACCTGCAACAGGAAGGTTACCTGCATAAATGCTAG 4869 0.4091 MPDGESSTAVTDQFSDQGNSLSLSTVKNHDDSVIKDPTKIARKYQLALCKKAMEENIIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAKVISDSTDFEVGTCCGSNKRSKSHQHWEEEIEQFEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQAKSSHPYAEIMKVFYKSNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLELILDAKVYSVKDEALKAFVTTPEVNIYHYSSTTNMETSLEWKLEEFKCQCTETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGFWGALQASRILLSGDRSERHALVEAEGISSDESVCDKYLAKTAELFHSKCGSVSDPSSWEILKEPFFSAKLLRLIGILTTFRLQQNMKCIIFVNRIVTARALSYILRQLELLRHWKSDFLVGVHSGVKIMSRKAINMIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELDIIAGFEKDEFRMNTEITVRTSSETHNIPVEKIFKVESSGASVSAAYSIQLLHQYCSKLPRDEFFDPRPNFFYFDDLGGTVCQITLPSNASIHQIVSTPQLSLEAAKRDACLKAIEELYKLGALNDCLLPRQNDTGTEKVSGSSDSDDCEDDHSRGELHEMRVPSVFRQSWKNEQKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTPLPMEAEELELDLHLARSRSVMTKFMPFGVVEFNKDEIKMAENFQEMFLRVILDRLEFVSKFVELGAESCTNTSTFYLLLPVILKEYDDVMKVDWETVKRCLCSPIFRHPVDTLNKKVTPLDNHLQLANGYRSVRDVENSLVYVPHTKFFYCVTNIIYEKNGFSPYKDSNTSNYADHFNEKYSINLKSPEQPLLHAKQLFNLHNLLHDRKNEDAEEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKQQLSSSFPEATEISAHRFLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVYIRDQAFDPLRFYALGRPCPTVCTKENEDNIHLGLTSVEDKSSASATDIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAIAFLAWIGIEVNFEASQLVNICTASVGYFPLSAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPNLKPGQLTDLRALSVNNKAFACVAVERCFDQYLLCDSKELSKAVKRYVDYIRRSVSDSGNDGGPKSPKALGDLVESCVGAILLDSGFDLNEVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNSLELQLLESKQGKKFSVDVKVIGDNVCEKVCITSQNKKEASRIASQLLFSKLKAQGLKLKSKTLEDVLKTTFKAEPKLIGYDETPIDVTDTTTIGQEMVNGDLCDNSNPEIFRIREVSDAQSSCVKPVAQWLQSSPKEKLGETSRNRDCGSDSSKTGNARSRLYELCAAYCWKPPLFECCKEEGPAHLKLFTCKATMEIEEASGMVFEFIGEPLPKKKDAADSAASAAFWYLQQEGYLHKC 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04649 1622 SMART ultradead3 37 253 IPR014001 -
Trre15g04649 1622 FunFam Endoribonuclease dicer-like 1 373 536 - -
Trre15g04649 1622 ProSiteProfiles PAZ domain profile. 858 959 IPR003100 GO:0005515
Trre15g04649 1622 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 566 656 IPR005034 GO:0016891
Trre15g04649 1622 FunFam Endoribonuclease dicer-like 1 1192 1363 - -
Trre15g04649 1622 PANTHER DICER-RELATED 54 1439 - -
Trre15g04649 1622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 517 IPR027417 -
Trre15g04649 1622 MobiDBLite consensus disorder prediction 653 673 - -
Trre15g04649 1622 MobiDBLite consensus disorder prediction 659 673 - -
Trre15g04649 1622 Gene3D - 1546 1615 - -
Trre15g04649 1622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 224 IPR014001 -
Trre15g04649 1622 Pfam Helicase conserved C-terminal domain 388 500 IPR001650 -
Trre15g04649 1622 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1539 1613 - -
Trre15g04649 1622 MobiDBLite consensus disorder prediction 1516 1538 - -
Trre15g04649 1622 SMART riboneu5 1006 1177 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 SMART riboneu5 1213 1365 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 SMART helicmild6 412 502 IPR001650 -
Trre15g04649 1622 Gene3D Ribonuclease III domain 1195 1369 IPR036389 GO:0004525|GO:0006396
Trre15g04649 1622 SUPERFAMILY dsRNA-binding domain-like 1538 1619 - -
Trre15g04649 1622 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04649 1622 Gene3D Dicer dimerisation domain 561 659 IPR038248 -
Trre15g04649 1622 Gene3D Ribonuclease III domain 989 1168 IPR036389 GO:0004525|GO:0006396
Trre15g04649 1622 SUPERFAMILY dsRNA-binding domain-like 1324 1434 - -
Trre15g04649 1622 SMART PAZ_2_a_3 832 985 IPR003100 GO:0005515
Trre15g04649 1622 Gene3D - 41 294 IPR027417 -
Trre15g04649 1622 Pfam DEAD/DEAH box helicase 44 204 IPR011545 GO:0003676|GO:0005524
Trre15g04649 1622 CDD RIBOc 1008 1167 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 Gene3D - 375 536 IPR027417 -
Trre15g04649 1622 SUPERFAMILY RNase III domain-like 1005 1172 IPR036389 GO:0004525|GO:0006396
Trre15g04649 1622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 537 IPR001650 -
Trre15g04649 1622 SUPERFAMILY PAZ domain 854 957 IPR036085 GO:0005515
Trre15g04649 1622 Pfam Ribonuclease III domain 1233 1342 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 Pfam Ribonuclease III domain 1024 1157 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 Gene3D paz domain 852 957 - -
Trre15g04649 1622 SMART DRBM_3 1540 1614 IPR014720 -
Trre15g04649 1622 SMART DRBM_3 1370 1434 IPR014720 -
Trre15g04649 1622 Pfam Dicer dimerisation domain 566 651 - -
Trre15g04649 1622 ProSiteProfiles Ribonuclease III family domain profile. 986 1157 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 SUPERFAMILY RNase III domain-like 1197 1361 IPR036389 GO:0004525|GO:0006396
Trre15g04649 1622 ProSiteProfiles Ribonuclease III family domain profile. 1198 1342 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 FunFam Endoribonuclease dicer-like protein 36 275 - -
Trre15g04649 1622 CDD RIBOc 1214 1364 IPR000999 GO:0004525|GO:0006396
Trre15g04649 1622 CDD DEXHc_dicer 39 238 - -
Trre15g04649 1622 Pfam PAZ domain 858 980 IPR003100 GO:0005515
Trre15g04649 1622 FunFam Endoribonuclease dicer-like 1 561 657 - -
Trre15g04649 1622 ProSitePatterns Ribonuclease III family signature. 1233 1241 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04649 Trre-Chr15 57236034 57248590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04649 400 532 Eukaryotic Initiation Factors Gene Family AT3G19760 31.159 7.53e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04649 K11592 - gmx:100797277 2433.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04649 15 57236034 57248590 Trre15g04649 15 57236034 57248590 ECH