Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04648 ATGCCGGACGGAGAATCATCCACCGCCGTTACTGATCAGTTTTCTGATCAAGGGAACTCATTGAGTCTTTCCACAGTCAAAAACCATGATGACTCTGTCATAAAAGATCCTACCAAAATTGCAAGAAAGTATCAATTGGCTTTATGCAAAAAAGCTATGGAGGAAAATATAATTGTTTATTTGGGGACAGGATGTGGGAAGACACACATTGCTGTGCTGCTTATGCATGAAATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCGACTGTTGCTTTAGTTCATCAGCAAGCAAAGGTTATATCCGACTCTACTGATTTTGAAGTTGGAACTTGCTGCGGGAGTAACAAGCGCTCCAAATCTCATCAACACTGGGAGGAGGAGATTGAACAATTTGAGGTTCTTGTTATGACCCCGCAAATATTACTCCACAATTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGCCAAAAGCAGCCATCCTTATGCAGAAATCATGAAGGTCTTCTATAAAAGCAATTCCACAAAAGTTCCCCGCATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGAAGCAAATCTACCAAAAAGCATCAACAGTCTTGAACTAATCCTTGATGCTAAGGTATACTCAGTTAAAGACGAGGCATTGAAAGCTTTTGTGACCACTCCTGAAGTTAATATATATCATTATAGTTCGACCACAAATATGGAAACTAGCTTGGAGTGGAAACTTGAGGAGTTTAAATGCCAGTGCACAGAAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAACCGCGTACATGATAATGTGGTCTTCTGTCTCAGGAGTCTCGGCTTTTGGGGAGCTTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCGTTCCGAGAGGCATGCATTAGTTGAGGCAGAAGGAATTTCAAGCGACGAGTCTGTATGTGATAAATATCTTGCTAAGACAGCTGAACTATTTCATTCAAAATGTAAGACAAGCGGCAGTGTTTCTGATCCATCTTCCTGGGAAATATTAAAAGAGCCTTTTTTCTCAGCAAAGCTATTACGCCTCATTGGGATACTGACCACTTTCAGGTTACAACAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACCGCAAGAGCTCTGTCATACATACTACGGCAGCTCGAGCTTCTAAGACACTGGAAGAGTGATTTTCTTGTAGGAGTCCATTCTGGAGTGAAGATTATGTCACGGAAGGCCATTAATATGATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCCACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTAGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCGTTCAGAATATGCATTTTTAGTTGACAGTGGCAATGAGAAGGAATTAGACATAATTGCTGGTTTTGAGAAAGATGAATTTCGAATGAATACGGAAATTACTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAAATATTCAAAGTTGAATCATCTGGTGCCTCAGTCAGTGCTGCATATAGTATCCAATTGCTTCACCAGTATTGTTCAAAGCTTCCACGTGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTTCAATACACCAAATTGTCAGTACGCCACAGTTGTCTTTGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTGCTTTGAATGACTGTCTCTTGCCAAGGCAAAATGATACAGGGACAGAGAAGGTTTCGGGCTCTTCTGATTCCGATGACTGTGAAGATGACCATTCAAGAGGGGAGTTACATGAGATGCGAGTTCCTTCTGTCTTTAGACAGTCATGGAAAAATGAGCAGAAAACTGTCCGTCTCAACTCATACTACATTAAATTTTGCCCTACTCCAGAGGATAGGGTCTATAAAAAGTTTGGTTTATTCATCATGACTCCTCTTCCAATGGAGGCTGAAGAACTGGAACTTGATCTTCATCTTGCTCGCAGTAGATCTGTGATGACAAAATTTATGCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCTGAGAATTTTCAAGAAATGTTCCTTAGAGTTATCCTTGATAGATTAGAGTTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCTTGCACAAACACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATACGATGATGTGATGAAAGTAGATTGGGAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGTTGATACTTTGAATAAAAAGGTTACCCCTTTGGATAATCATCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGTTCCACATACAAAGTTCTTCTATTGTGTCACAAATATTATCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAAACACTTCAAACTACGCGGACCACTTCAATGAAAAGTATTCCATTAATCTCAAAAGCCCCGAACAACCACTTCTGCATGCAAAACAACTTTTCAATTTGCACAACCTGCTACACGATCGAAAGAATGAGGATGCTGAAGAACCTCATGAGCTAGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGTAGTTCCATATCTTTGCTACCTTCAATTATGCATCGTCTCGGAAACTTGCTGGTTGCCATTGAACTGAAGCAGCAGCTATCTTCCTCCTTCCCAGAGGCAACGGAAATTAGTGCCCATAGATTTCTAGAAGCTCTCACCACCGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGACGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGATCCAATGTTGTAAATAATTCCAATTTGCTTAAGTTGGCTATTAGGCGCAATTTGCAGGTCTATATACGTGATCAAGCATTTGATCCATTACGGTTCTATGCATTAGGCCGTCCTTGCCCTACAGTTTGTACCAAGGAAAATGAAGACAACATACACTTAGGTTTAACTTCTGTTGAGGACAAAAGTAGTGCAAGTGCAACTGATATCCGATGTAATAAAAATCACCATTGGCTGTATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTGGGGGCATTCATCGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTGCATGGATTGGCATAGAAGTAAATTTTGAAGCCTCACAACTTGTTAATATTTGCACCGCGAGTGTTGGCTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCACGGAGGAGGATGTTATCAGAGATTGGAGTTCCTTGGGGATGCTGTTTTAGATTTTCTAATTACGTCGTATCTATATTCAGCATACCCCAATCTAAAGCCCGGCCAACTGACAGATCTGAGGGCATTGTCTGTCAATAATAAGGCATTCGCCTGTGTGGCCGTGGAACGCTGTTTTGATCAATATCTTCTGTGTGATTCAAAAGAACTGAGCAAGGCAGTCAAAAGGTATGTGGATTACATCAGAAGATCTGTATCAGACAGTGGCAATGATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTTGATTTGAACGAAGTTTGGAAGATCATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTGTGCCAATTTAATAGTTTGGAATTGCAGCTTCTGGAATCAAAACAAGGTAAAAAGTTTTCAGTTGATGTCAAAGTGATTGGGGACAATGTCTGTGAAAAAGTTTGTATCACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCCTCACAGCTACTTTTTTCAAAGTTGAAGGCTCAAGGCTTGAAATTGAAGTCCAAAACTTTGGAAGATGTTCTGAAAACAACATTTAAGGCGGAACCAAAACTGATTGGCTATGATGAAACCCCCATTGATGTAACGGATACGACCACCATTGGACAGGAAATGGTTAATGGAGATCTATGCGACAATTCTAATCCAGAAATCTTCCGTATCCGGGAGGTATCTGATGCACAGTCCTCGTGTGTGAAACCTGTCGCCCAATGGCTTCAATCTTCTCCTAAGGAAAAGCTTGGTGAAACCAGTCGAAATCGTGATTGTGGCAGTGACTCATCAAAGACAGGAAATGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTTTATTTGAATGCTGCAAGGAAGAGGGACCAGCCCACCTTAAGTTATTCACGTGCAAGGCAACGATGGAGATAGAAGAGGCGTCAGGTATGGTTTTCGAGTTTATTGGGGAACCTCTACCAAAGAAGAAAGATGCCGCAGATAGTGCAGCTTCGGCTGCATTTTGGTACCTGCAACAGGAAGGTTACCTGCATAAATGCTAG 4878 0.409 MPDGESSTAVTDQFSDQGNSLSLSTVKNHDDSVIKDPTKIARKYQLALCKKAMEENIIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAKVISDSTDFEVGTCCGSNKRSKSHQHWEEEIEQFEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQAKSSHPYAEIMKVFYKSNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLELILDAKVYSVKDEALKAFVTTPEVNIYHYSSTTNMETSLEWKLEEFKCQCTETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGFWGALQASRILLSGDRSERHALVEAEGISSDESVCDKYLAKTAELFHSKCKTSGSVSDPSSWEILKEPFFSAKLLRLIGILTTFRLQQNMKCIIFVNRIVTARALSYILRQLELLRHWKSDFLVGVHSGVKIMSRKAINMIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELDIIAGFEKDEFRMNTEITVRTSSETHNIPVEKIFKVESSGASVSAAYSIQLLHQYCSKLPRDEFFDPRPNFFYFDDLGGTVCQITLPSNASIHQIVSTPQLSLEAAKRDACLKAIEELYKLGALNDCLLPRQNDTGTEKVSGSSDSDDCEDDHSRGELHEMRVPSVFRQSWKNEQKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTPLPMEAEELELDLHLARSRSVMTKFMPFGVVEFNKDEIKMAENFQEMFLRVILDRLEFVSKFVELGAESCTNTSTFYLLLPVILKEYDDVMKVDWETVKRCLCSPIFRHPVDTLNKKVTPLDNHLQLANGYRSVRDVENSLVYVPHTKFFYCVTNIIYEKNGFSPYKDSNTSNYADHFNEKYSINLKSPEQPLLHAKQLFNLHNLLHDRKNEDAEEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKQQLSSSFPEATEISAHRFLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVYIRDQAFDPLRFYALGRPCPTVCTKENEDNIHLGLTSVEDKSSASATDIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAIAFLAWIGIEVNFEASQLVNICTASVGYFPLSAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPNLKPGQLTDLRALSVNNKAFACVAVERCFDQYLLCDSKELSKAVKRYVDYIRRSVSDSGNDGGPKSPKALGDLVESCVGAILLDSGFDLNEVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNSLELQLLESKQGKKFSVDVKVIGDNVCEKVCITSQNKKEASRIASQLLFSKLKAQGLKLKSKTLEDVLKTTFKAEPKLIGYDETPIDVTDTTTIGQEMVNGDLCDNSNPEIFRIREVSDAQSSCVKPVAQWLQSSPKEKLGETSRNRDCGSDSSKTGNARSRLYELCAAYCWKPPLFECCKEEGPAHLKLFTCKATMEIEEASGMVFEFIGEPLPKKKDAADSAASAAFWYLQQEGYLHKC 1625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04648 1625 SMART ultradead3 37 253 IPR014001 -
Trre15g04648 1625 Pfam Dicer dimerisation domain 569 654 - -
Trre15g04648 1625 CDD RIBOc 1217 1367 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 ProSiteProfiles Ribonuclease III family domain profile. 1201 1345 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 SMART riboneu5 1009 1180 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 SMART riboneu5 1216 1368 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 Gene3D - 1549 1618 - -
Trre15g04648 1625 FunFam Endoribonuclease dicer-like 1 1195 1366 - -
Trre15g04648 1625 SMART PAZ_2_a_3 835 988 IPR003100 GO:0005515
Trre15g04648 1625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 520 IPR027417 -
Trre15g04648 1625 Gene3D Ribonuclease III domain 992 1171 IPR036389 GO:0004525|GO:0006396
Trre15g04648 1625 FunFam Endoribonuclease dicer-like 1 376 539 - -
Trre15g04648 1625 SUPERFAMILY PAZ domain 857 960 IPR036085 GO:0005515
Trre15g04648 1625 MobiDBLite consensus disorder prediction 1519 1541 - -
Trre15g04648 1625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 224 IPR014001 -
Trre15g04648 1625 FunFam Endoribonuclease dicer-like protein 36 275 - -
Trre15g04648 1625 MobiDBLite consensus disorder prediction 656 676 - -
Trre15g04648 1625 MobiDBLite consensus disorder prediction 662 676 - -
Trre15g04648 1625 SUPERFAMILY dsRNA-binding domain-like 1541 1622 - -
Trre15g04648 1625 Gene3D Ribonuclease III domain 1198 1372 IPR036389 GO:0004525|GO:0006396
Trre15g04648 1625 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04648 1625 SMART helicmild6 415 505 IPR001650 -
Trre15g04648 1625 SMART DRBM_3 1543 1617 IPR014720 -
Trre15g04648 1625 SMART DRBM_3 1373 1437 IPR014720 -
Trre15g04648 1625 Pfam Helicase conserved C-terminal domain 391 503 IPR001650 -
Trre15g04648 1625 Gene3D Dicer dimerisation domain 564 662 IPR038248 -
Trre15g04648 1625 CDD RIBOc 1011 1170 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 Gene3D - 41 294 IPR027417 -
Trre15g04648 1625 Gene3D paz domain 855 960 - -
Trre15g04648 1625 Gene3D - 378 539 IPR027417 -
Trre15g04648 1625 ProSiteProfiles PAZ domain profile. 861 962 IPR003100 GO:0005515
Trre15g04648 1625 ProSitePatterns Ribonuclease III family signature. 1236 1244 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 569 659 IPR005034 GO:0016891
Trre15g04648 1625 Pfam DEAD/DEAH box helicase 44 204 IPR011545 GO:0003676|GO:0005524
Trre15g04648 1625 SUPERFAMILY RNase III domain-like 1200 1364 IPR036389 GO:0004525|GO:0006396
Trre15g04648 1625 SUPERFAMILY RNase III domain-like 1008 1175 IPR036389 GO:0004525|GO:0006396
Trre15g04648 1625 PANTHER DICER-RELATED 54 1442 - -
Trre15g04648 1625 SUPERFAMILY dsRNA-binding domain-like 1327 1437 - -
Trre15g04648 1625 Pfam Ribonuclease III domain 1236 1345 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 Pfam Ribonuclease III domain 1027 1160 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 ProSiteProfiles Ribonuclease III family domain profile. 989 1160 IPR000999 GO:0004525|GO:0006396
Trre15g04648 1625 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1542 1616 - -
Trre15g04648 1625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 540 IPR001650 -
Trre15g04648 1625 Pfam PAZ domain 861 983 IPR003100 GO:0005515
Trre15g04648 1625 FunFam Endoribonuclease dicer-like 1 564 660 - -
Trre15g04648 1625 CDD DEXHc_dicer 39 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04648 Trre-Chr15 57236034 57248590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04648 403 535 Eukaryotic Initiation Factors Gene Family AT3G19760 31.159 7.62e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04648 K11592 - gmx:100797277 2437.91