Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04636 ATGGCGTTTCATGAGCATCTGCAGCACGAAATAGCATACCAGAGATTCACAGAAGAAGAAGAAGATGAAGAAAGAGTACCATGGATTAACAACAACAACAACAACAACAACAACAGTGTAAACGCGCGTCAACAGAATTTCATGCACTTGGAACCGGAGAGAAGTGAGAAAAGTATGGATCGGAACCGGAGTGAGAACAATTGTACTGAAACGGAAGAGTTAAGGGAATACAAAGCGGAGATATTAGGACATCCACTTTACGATCAATTATTATCGGCACATGTTTCGTGTTTACGAATTGCTACACCGGTGGATCAGCTTCCCAGAATCGATGCTCAGCTTCAACAATCACAGCGTGTTCTTCAGAAATATTCTTCTGTTGGAATTGGAAATATGGATCCCAAGGAGCTTGATCACTTTATGACGCATTATGTTCTTTTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCTATGGAGGCAGTGATGGCTTGTTGGGATCTAGAGCAGTCTCTGCAAAGTTTGACAGGTGTATCTTCAGGTGAAGGAACTGGAGCAACAATGTCCGACGATGAAGAGGAGCAGGCAGAGAGTAATGCCAAGTTGTACGAAGGAGGTGGCTTTGATGGCGGCGTTGATACACTTGGCTTTGGTCCTCTTGTCCCCACCGAGACCGAAAGGTCTTTGATGGAGCGAGTTAGGCTTGAGCTGAAGCATGAGCTCAAACAAGGTTACAAGTCGAAGATTGTAGATGTAAGAGAAGAAATTCTAAGAAAGAGAAGAGCCGGGAAACTCCCCGGGGATACCACCTCTCTTTTGAAGGCTTGGTGGCAGTCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTGAAGCAAATAAACAATTGGTTCATAAACCAAAGAAAAAGGAATTGGCATGCTAACTCCCCATCTTCCAGTAACTCCAAAACCAAACGCAAGAGCAGTGCAGGTGGTGAAACAAGTAACCAGAGCTTCATGTGA 1053 0.4463 MAFHEHLQHEIAYQRFTEEEEDEERVPWINNNNNNNNNSVNARQQNFMHLEPERSEKSMDRNRSENNCTETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSVGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQAESNAKLYEGGGFDGGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKSKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSNSKTKRKSSAGGETSNQSFM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04636 350 MobiDBLite consensus disorder prediction 182 203 - -
Trre15g04636 350 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Trre15g04636 350 SUPERFAMILY Homeodomain-like 263 328 IPR009057 -
Trre15g04636 350 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
Trre15g04636 350 Pfam ELK domain 241 262 IPR005539 GO:0003677
Trre15g04636 350 SMART KNOX2_2 126 182 IPR005541 GO:0003677|GO:0005634
Trre15g04636 350 SMART HOX_1 263 328 IPR001356 GO:0003677
Trre15g04636 350 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Trre15g04636 350 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Trre15g04636 350 CDD homeodomain 264 323 IPR001356 GO:0003677
Trre15g04636 350 FunFam homeobox protein knotted-1-like 3 isoform X1 262 323 - -
Trre15g04636 350 MobiDBLite consensus disorder prediction 320 350 - -
Trre15g04636 350 Pfam KNOX2 domain 134 181 IPR005541 GO:0003677|GO:0005634
Trre15g04636 350 Gene3D - 267 344 - -
Trre15g04636 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 335 - -
Trre15g04636 350 SMART ELK_2 241 262 IPR005539 GO:0003677
Trre15g04636 350 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04636 Trre-Chr15 57101703 57107343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04636 77 341 Homeobox Transcription Factor Family AT5G11060 81.041 4.22e-160 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre15g04636 KNOX2 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04636 - - gmx:100803673 530.02