Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04629 ATGGGTTCCAGTTCTAGTAGACTTGGGTCTCGCCCTTCTTCTACTCCAAGGGTCAACAACAACAACAACCATCGCTTCAGATTCTCTTCCTTTCTCTGCGGCGCTTCCACCTCTCGCTCCATTTCTCAGATGGAAGAACATCAATATGAAGAACTTCAGGTTAATTCAGCTAGAGATTTCGATGATGAAATTCAGAAAGTTGCTGATGAATCATCATTATCATGTACAGAAGAAGCTAGAATTAGTTGCTGTCCTCAAGCTGAAACTTCAACGTCAACTGATACGAGAACCCAATTCTGCGGGAATGATACTGTTGAAGGTTCTTCTGGAAATGTTGCAACAAGTAGTCAGAGGAATTGCTTGTTTGAACATAAGGAGCTAGTCCCTCCTTATCGGGTAAGTGCTGGTCATAGTCATCCTGAATCATATAGTGATAGTAACAACACAGCTAGTACTTCATTTGTTGAACAGCTGTCTTCAGACCCAGTTTCTTTAAATGTTTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTTGTTAGTGGTGTCTCTCGAATCTCTCGCGAGACGGAGCGTCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATCCCAATTCTGGTGAAATTTCTGTTGAGAATGACACGGATGCAAACACATCTGTCCAGAGTTCTTCGATTCCTGTTTCTCAAGCTTCTAGTACACCACCAACTTCCCAAGTTCCAGAAGATGAACGCCGTCATGAGACAATGCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTATGTTTCAAGTAGATGTGGTGGCAATATCTTCCAACATTTTATCTGGCAGCAATGCAGATGCCGATGATCATGATGCCAGAAGAAGCGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACTATCGTTTTCTCCACTGGAGGCGCTGATGATTCGGGATCTCAAGATCGGTGGCATGTTGATTTTGATGAGGATTTATCAAATGATGGGGTTAGAGGTGCGTCTGGATATCGGGGCAGTATTCACAGATTGAATGAAAGAGTGCGAAACTCAAGATCCGAGATATGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGTTGAACACTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCGTGCGAGTCATTCCCAATGGCTGAAGAATCTAGCACTCGATCAAGTATTTCAAGAATAGTTATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCTGTTTCCCTATCCACGGTCTCACTCCCTGCACCTGAATCAGTTGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTAGATGAAGCTGATGGAGGCAATGGTGATGAACAATGTTACATATGCCTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCATGTGTCGATAAGTGGCTGAAGGAAATACATGGTGTATGTCCTCTGTGTCGCGGCAATGTTTGTGGAGGGTTAACAGAGTCGTCAACCGACTCAGAAGTGCAGTCTCGGTGA 1632 0.4412 MGSSSSRLGSRPSSTPRVNNNNNHRFRFSSFLCGASTSRSISQMEEHQYEELQVNSARDFDDEIQKVADESSLSCTEEARISCCPQAETSTSTDTRTQFCGNDTVEGSSGNVATSSQRNCLFEHKELVPPYRVSAGHSHPESYSDSNNTASTSFVEQLSSDPVSLNVSANKDRINNVDDPVVSGVSRISRETERPRSSISQEHGNPNSGEISVENDTDANTSVQSSSIPVSQASSTPPTSQVPEDERRHETMPSGLGILVSNREIVQGNDGMFQVDVVAISSNILSGSNADADDHDARRSGRRLFWDAFSQRSSRRLGDSPTIVFSTGGADDSGSQDRWHVDFDEDLSNDGVRGASGYRGSIHRLNERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPMAEESSTRSSISRIVMLAEALFEVLDEIHRQPGSVSLSTVSLPAPESVVDSFPLKSHKKVDEADGGNGDEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGNVCGGLTESSTDSEVQSR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04629 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 528 IPR013083 -
Trre15g04629 543 FunFam Putative RING zinc finger domain superfamily protein 449 529 - -
Trre15g04629 543 MobiDBLite consensus disorder prediction 139 173 - -
Trre15g04629 543 Pfam Ring finger domain 481 524 IPR001841 -
Trre15g04629 543 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g04629 543 SUPERFAMILY RING/U-box 477 527 - -
Trre15g04629 543 SMART ring_2 482 523 IPR001841 -
Trre15g04629 543 MobiDBLite consensus disorder prediction 132 256 - -
Trre15g04629 543 ProSiteProfiles Zinc finger RING-type profile. 482 524 IPR001841 -
Trre15g04629 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
Trre15g04629 543 MobiDBLite consensus disorder prediction 199 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04629 Trre-Chr15 57064986 57068141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04629 393 528 C3H Transcription Factor Family AT5G45290 52.288 4.13e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04629 - - cam:101493889 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04629 15 57064986 57068141 Trre15g04629 15 57064986 57068141 ECH