Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04626 ATGTGTGTACAAGAGGGTGAACAAGTTGATCAAAATAACAATATGGAAGAACTTGATAACAGAAGAATTTCATGGCCTTTGCATTGTGATCTGTTACATGCCCATATGGATAATACAGAAAAAGAATCTTCTTTTAGAATTTCCAGTGACCAGATTAGTGCTGTTAATTCATTTCCTCTGGAAAGCATTTGTGAGAATACAGAGATTTCAGAGAAAAAACAGAATCTGATAAATTATGTCCCTACACTTCGGTCGGGGGAGTGGTCTGATATCGGAGGTCGGCCTTATATGGAGGATACTCACATATGCATTGGAGATTTGGCAAAGAAATTTGGTTATAATGTAATCAGCGACGAAGCGATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGCGATCATCTACCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTTGAGAAGGTGGTAACAAGGTCATTTTTGGAGATTGATTCAGAGTTTGCAAAAACATGCTCTATTGACTCTTCTCTATCTTCTGGTACAACTGCATTGACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCCAACGCCGGGGACTGCCGCGCTGTTTTGTCCCGAGGCGGAGCAGCTATAGAAATGTCCAAAGATCATAGGCCATTATGCATGAAAGAAAGGATGAGGATTGAGTCGCTTGGCGGATTTGTTGACGATGGTTACTTAAATGGACAGTTAGGCGTCACACGTGCTCTAGGCAACTGGCATCTCGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCATTGAGTGCTGAACCAGAACTTAAATTGACGACATTGACAAAAGATGACGAGTTTTTGATAATTGGAAGTGATGGAATATGGGACGTTTTTCGTAGCCAAAATGCCGTAGATTTTGCTAGGAGGAGGCTTCAACAGCATAATGATGTGAAACAATGTTGCAAGGAAATAATAGGAGAAGCAATAAAAAGAGGAGCAACAGATAATTTAACTGTTGTGATGGTATGCTTTCAATCAGATCCACCAACAACTCCTTTGATTGTTGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATGCCTGTTAGAAGGATGA 1152 0.4097 MCVQEGEQVDQNNNMEELDNRRISWPLHCDLLHAHMDNTEKESSFRISSDQISAVNSFPLESICENTEISEKKQNLINYVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVISDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLEIDSEFAKTCSIDSSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGAAIEMSKDHRPLCMKERMRIESLGGFVDDGYLNGQLGVTRALGNWHLEGMKEMSGRGGPLSAEPELKLTTLTKDDEFLIIGSDGIWDVFRSQNAVDFARRRLQQHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFQSDPPTTPLIVERPRVRRSISAEGLQNLKCLLEG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04626 383 CDD PP2Cc 84 349 IPR001932 -
Trre15g04626 383 Gene3D - 64 353 IPR036457 -
Trre15g04626 383 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Trre15g04626 383 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Trre15g04626 383 SUPERFAMILY PP2C-like 75 350 IPR036457 -
Trre15g04626 383 FunFam Probable protein phosphatase 2C 22 66 352 - -
Trre15g04626 383 SMART PP2C_4 74 347 IPR001932 -
Trre15g04626 383 ProSiteProfiles PPM-type phosphatase domain profile. 84 349 IPR001932 -
Trre15g04626 383 PANTHER PROTEIN PHOSPHATASE 2C 71 347 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04626 Trre-Chr15 57039864 57042333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04626 73 383 PP2C-type Phosphatase Gene Family AT2G25620 59.365 1.05e-131 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trre15g04626 PP2C 3.5e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04626 K14803 - gmx:100782648 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04626 15 57039864 57042333 Trre15g04626 15 57039864 57042333 ECH