Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04625 ATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCTAAAGTGTTTCTAAGCTCGAAGAAATCTGGAAAGGGAAAGAGGCCTGGAAAAGGTGGAAATCGCTTTTGGAAATCCGTTGGTCTTGGATTTAAGACTCCCAGAGATGCCATTGAAGGAGCCTACATTGACAAGAAGTGCCCTTTCACTGGCAATGTTTCCATCAGGGGCCGTATTTTAGCCGGAACTTGTCACAGTGCTAAGATGAACAGGACTATTATTGTTAGAAGGAATTATCTTCACTTTATTAAGAAGTATCAGAGATATGAGAAGAGGCATTCCAACATTCCTGCTCATGTATCACCTTGCTTCCGTGTTAAGGAAGGAGACCATGTAATTATCGGCCAATGCAGGCCTCTCTCCAAGACCGTGAGGTTCAACGTCTTGAAAGTGATCCCAGCTGGTTCATCGAGTGGTGCTGGAAAGAAGGCATTTACTGGAATTTGA 483 0.4389 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPRDAIEGAYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04625 160 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 151 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 Gene3D - 1 158 - -
Trre15g04625 160 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Trre15g04625 160 FunFam 40S ribosomal protein S11 1 159 - -
Trre15g04625 160 SUPERFAMILY Nucleic acid-binding proteins 68 150 IPR012340 -
Trre15g04625 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Trre15g04625 160 NCBIfam 30S ribosomal protein S17 56 143 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04625 Trre-Chr15 57024751 57026352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04625 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G48930 91.875 1.37e-99 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04625 K02949 - fve:101305700 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04625 15 57024751 57026352 Trre15g04625 15 57024751 57026352 ECH