Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04624 ATGGCGGTGAAAAAAGCTTCAACACCCACTCTCTTCCATTCTCAATCCCTAATCTCCCAAACCGATTCTACTTCAAGTGTATTGTGTGGTCTGTGGAGAATGGGAAGTAACAGTGTTGAAAAGATCCCTATCAATAACAGCACTGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATACCCTCAAAGTGGATAAACAGATGCCAGTGCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGGTATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGACGATCAACTATTGTCTGCCTACCATGTTGAAGATGGTCACACACTCCATCTGGTTGTGAGGCATCCTGATCTGCCACCACCAGGAAGTCTGCCCAATCATTCAGCGACTGAGCCAAACTCAAGCACAAGCCATGGTCACAGTACTCAAGTCGCTCCAGGTGTTTTCATTGAAACTTTCAATGTTCCTGTTCAGGGTGATGGAGTTCCACCTGAAATAAATAGGATTGTTTCTGCTGTTCTAGGCTCTATCGCTGGGCTTCCAAATTTTGCAAGTGGCGGTGAAGGGATTGTTGTCAGGGATAATGATTCCCAAGGCCTTGGAAGAACATCAGATTCTAGTGGAATACCAGATCCGCTACATCCAATCCTTGATCAAACTGGTTTACGGAGTTTGTCAGATAGATTACGGAATACTTTTGGAGTACCAGCATCAAGTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTACCTAAGTCATATGAGCCATGAATTTGATACAATTGTTAGAGAAGTCAGAGAAGGGGGGAATAATGCCCAACCCGCTGAGGCTCGTAGTAATGAAGAAATGGGATCCGCTTCTTCACGTTTGGGTTCAACACTGGCAAATCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGATCATTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAATCAGATGTAACTGATGCCTCGTCGCGATCAAGCTTTCAATCTAGGGCTATGAGGACTGGAACATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGTACAACCATGACATTGCGTTTGGGTCAGACACCGTCTGAAGCTGTAGTCAATGGTGGACCTGCAGTTTTTGTATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGCAGGAGCTGCACAGTCTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAATTTTTTCCCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCGACAACCACACCCAACGCCAATCAAGAAGACCGTGGGGATACACAATCTGCTTCAGTACAAAGAAATCCAGCTGAAAGTTCTGCTAGTCAAGCAACGTCTAGGCGACCAGATGCATCTATTGCCGCAGAGCCAGCAATAAGGATAGTGCCAATTAGAACTATGGTTGCAGCAGTACCTGGTCCCTTGGGTCATCCTTCTTCAGAACCATCTGGTAATTCTACAGGGCTTTACCATCCACTTCTTGGGAGATTTCAACGTGTAACTACAGGGCAGGCAAATAGTGAACAAGGATCTCAATCTGCAAGTCAGCATCGTGCACCACATTCAACTCCTGAATCCACATTGGAAAGGCAAAGCGCGGAAGACTCTGCAAGGAATGGTACCTCATCAACTCCAAACACGAGACAAGAGCCATCTAATTCCCGTGTTGTAAATATCAATATTCTGGCAGCTGGTGGGCCCCAAAACAACCAAGAGTCTGATAGACAGATACCAAGCAGTGTACTTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGATATTCACGTGGAGGATTCAAGCTTACAAGGAGCAAATGTGGGTTCCACCCCAGTGCATGCTGCAACATCAAGGAGTTCTCCCCAAGTCCCTGATGCTGAACCTCCTGTTAGTGATGAAGGATTATTTTTGTCTAATGTACTCCGTGAGATCATGCCGGTTATATCTCAACGTGTAGGGTCTGAGAGAAATCCTTCTGAAGATCAAACAGCTCAAGATTCGTCAAACCAGGTTGAAACTAATGCCGCTGGGACATCACGCAGACACAGTGGTTCTGAACCAAGCCCTCCAGATGCAAAACGCCAAAAGAGGGAATGA 2262 0.4545 MAVKKASTPTLFHSQSLISQTDSTSSVLCGLWRMGSNSVEKIPINNSTGSSETTIEIKIKTLDSQTYTLKVDKQMPVPALKEQIASVTGVVSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRHPDLPPPGSLPNHSATEPNSSTSHGHSTQVAPGVFIETFNVPVQGDGVPPEINRIVSAVLGSIAGLPNFASGGEGIVVRDNDSQGLGRTSDSSGIPDPLHPILDQTGLRSLSDRLRNTFGVPASSSLGSLQPPVIPDSLTTLSQYLSHMSHEFDTIVREVREGGNNAQPAEARSNEEMGSASSRLGSTLANLSSPASLAEVLLSTRRMIIEQAGECILQLARQLENQSDVTDASSRSSFQSRAMRTGTLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFVSPTGPNHIMVQPLPFQPGASFGAVPAGAAQSDSSLGSGLGSNFFPRRIDIQIRRGTSTTTPNANQEDRGDTQSASVQRNPAESSASQATSRRPDASIAAEPAIRIVPIRTMVAAVPGPLGHPSSEPSGNSTGLYHPLLGRFQRVTTGQANSEQGSQSASQHRAPHSTPESTLERQSAEDSARNGTSSTPNTRQEPSNSRVVNINILAAGGPQNNQESDRQIPSSVLQFLRTLFPGGDIHVEDSSLQGANVGSTPVHAATSRSSPQVPDAEPPVSDEGLFLSNVLREIMPVISQRVGSERNPSEDQTAQDSSNQVETNAAGTSRRHSGSEPSPPDAKRQKRE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04624 753 MobiDBLite consensus disorder prediction 558 610 - -
Trre15g04624 753 Pfam Ubiquitin family 57 126 IPR000626 GO:0005515
Trre15g04624 753 SUPERFAMILY Ubiquitin-like 45 145 IPR029071 -
Trre15g04624 753 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 44 744 - -
Trre15g04624 753 FunFam Large proline-rich protein BAG6 47 140 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 657 679 - -
Trre15g04624 753 PRINTS Ubiquitin signature 107 128 IPR019956 -
Trre15g04624 753 PRINTS Ubiquitin signature 65 85 IPR019956 -
Trre15g04624 753 PRINTS Ubiquitin signature 86 106 IPR019956 -
Trre15g04624 753 MobiDBLite consensus disorder prediction 139 154 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 206 228 - -
Trre15g04624 753 SMART ubq_7 55 126 IPR000626 GO:0005515
Trre15g04624 753 MobiDBLite consensus disorder prediction 704 753 - -
Trre15g04624 753 Gene3D - 48 145 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 128 154 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 465 505 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 655 687 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 465 510 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 291 312 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 294 312 - -
Trre15g04624 753 MobiDBLite consensus disorder prediction 707 740 - -
Trre15g04624 753 ProSiteProfiles Ubiquitin domain profile. 55 130 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04624 Trre-Chr15 57006917 57022267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04624 55 126 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.34e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04624 K23390 - gmx:100783070 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04624 15 57006917 57022267 Trre15g04624 15 57006917 57022267 ECH