Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04608 ATGGATGTGGATGATAAAAGCCAACAGCAGAAAGCAATTACTCAATTTGATAGGCTTCAGGAGCTTCTTTCGAATGAAGGCTGCCCACCCGCTGAGAAAGTTATTGATTCATTTATTCAATCTCGTGCTGTTCCTCGTTTACTTAAATTTCTAGCTATGGATGATTTCCCTCGAGTTCAGTTTAAGGCTGCTTGGTTACTCGCATACATAGCATCTGGAACTTCTAACCACATTAAGGTGGTAATTGATCATGGGACAGTGCCAATATTTGTCAACCTACTTAGTTCACCTAGTCATCATGTCCGGGAACAGGCTGCGTGGGCATTGGGAAACATTGCCAGGGCAAGCCACAACCCCAATTTGAGCAGAATCCAAGCCGTGATTGACGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTCAGCACCCATCTCCTTCCGTGTTGATTCCTGCGCTTCTCACGGTGGGAAATATTGTAAGTGGAGACGATATGCAGACTCAGGTTGTTATCAAACATGGTTTACTCCCATGCCTTGTGAGCCTGTTGACCCATAATCATGACAAAAGTATTCAGATAGAGGCTTGCTGGACCATAGCAAACATTACATCCGGAAACACTGAGCACATACAGGCTGTTATTGAAGCTGGTTTGATTGCTTCCCTAGTCAATCTCTTTCAAAATGCCGAGTTTCACATTAAAAAAGAAGCTGCATGGGCATTATATAATGCTTCATCCGGCGGTACCAATGACCAAATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTACTCGTTTGCCCTGATCCAAAAGTTGTTACTATCTGTTTAGAAGGTCTTGACAATTTTCTGAAGGTTGGAGAAGCGGAGAAAGGTTTTGCTAACACGGGAGATGATGTCAACTTGTATGCTCAGATGATAGATGATGCCGAGGGATTGAAAAAGATTGAAAAATTGCAGAGCCATGACAACAATGAAGTTTATGAGAAGGCTGTTAAAATTCTCAAGACATATTATTTGGTGGAAGACGGCGTACCTCCAGGCAATGAACGACGAAGAGAAGACGAGACCTCTAGGCTATGA 1092 0.4368 MDVDDKSQQQKAITQFDRLQELLSNEGCPPAEKVIDSFIQSRAVPRLLKFLAMDDFPRVQFKAAWLLAYIASGTSNHIKVVIDHGTVPIFVNLLSSPSHHVREQAAWALGNIARASHNPNLSRIQAVIDAGVCGRLVQLLQHPSPSVLIPALLTVGNIVSGDDMQTQVVIKHGLLPCLVSLLTHNHDKSIQIEACWTIANITSGNTEHIQAVIEAGLIASLVNLFQNAEFHIKKEAAWALYNASSGGTNDQIKYLVSQGCIKPLCDLLVCPDPKVVTICLEGLDNFLKVGEAEKGFANTGDDVNLYAQMIDDAEGLKKIEKLQSHDNNEVYEKAVKILKTYYLVEDGVPPGNERRREDETSRL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04608 363 Pfam Atypical Arm repeat 304 346 IPR032413 -
Trre15g04608 363 Gene3D - 1 118 IPR011989 -
Trre15g04608 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 173 216 IPR000225 GO:0005515
Trre15g04608 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 85 113 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 162 203 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 205 245 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 74 114 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 248 288 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 119 160 IPR000225 GO:0005515
Trre15g04608 363 SMART arm_5 30 72 IPR000225 GO:0005515
Trre15g04608 363 Gene3D - 119 343 IPR011989 -
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 205 244 IPR000225 GO:0005515
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 36 72 IPR000225 GO:0005515
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 163 203 IPR000225 GO:0005515
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 124 159 IPR000225 GO:0005515
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 75 114 IPR000225 GO:0005515
Trre15g04608 363 Pfam Armadillo/beta-catenin-like repeat 248 280 IPR000225 GO:0005515
Trre15g04608 363 SUPERFAMILY ARM repeat 29 341 IPR016024 -
Trre15g04608 363 ProSiteProfiles HEAT repeat profile. 86 123 IPR021133 -
Trre15g04608 363 PANTHER IMPORTIN ALPHA 122 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04608 Trre-Chr15 56792078 56794419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04608 63 236 U-box Gene Family AT1G23030 21.839 8.43e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04608 K15042 - gmx:100808498 382.489