Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04590 ATGATCAAAATCCGAACATCTGGTGTTTATAGTAAGGGATCTGGTGTCACTGTGGAATCTTCTCTCGTGGCTGAAGAGGTTGTTGCCACTCCTCCAGCTGCCGACACTAAGGCCACTGAAGCAGAGGATGATGTCGATGTGGATTTGTTTGGTGAAGAGACCGAGGCGGGGAATAGGACAATTGAGGAACGGGCAGCAGCCGCGAAAGCATCTAGCATAAAGAACGAGAGTGGGAAATCATTTGTATTGTTGGATGTAAAGCCATGGGATGATGAAACTGACATGAAGATACTTGAAGAAGCACTTAGATCTGTTCAGTTGGAAGGCTTGTTTTGGGGTGCATCCAAACTTGTTCTTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCCTACCATTGTGGATGATCTAGTTTTTGTTGACAATATGGTTGAGGATTATCTTTGTAGTAACCATACATAG 462 0.4372 MIKIRTSGVYSKGSGVTVESSLVAEEVVATPPAADTKATEAEDDVDVDLFGEETEAGNRTIEERAAAAKASSIKNESGKSFVLLDVKPWDDETDMKILEEALRSVQLEGLFWGASKLVLVGYGIKKLQIMPTIVDDLVFVDNMVEDYLCSNHT 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04590 153 CDD EF1B 77 145 IPR014038 GO:0003746|GO:0006414
Trre15g04590 153 FunFam Elongation factor 1-beta 1 like 74 153 - -
Trre15g04590 153 Pfam EF-1 guanine nucleotide exchange domain 82 145 IPR014038 GO:0003746|GO:0006414
Trre15g04590 153 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 16 146 - -
Trre15g04590 153 SMART EF1_GNE_2 79 149 IPR014038 GO:0003746|GO:0006414
Trre15g04590 153 Gene3D - 73 152 IPR014717 -
Trre15g04590 153 SUPERFAMILY eEF-1beta-like 77 147 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04590 Trre-Chr15 56599260 56599721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04590 4 148 Eukaryotic Initiation Factors Gene Family AT2G18110 68.243 6.68e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04590 K03232 - apan:127239872 183.726