Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04543 ATGGCAACACAGCCTGAGCATCCAATGAAGGCCTTCGGTTGGGCAGCTAGAGATTCTTCTGGTGTTCTCTCCCCTTACAATTTCTTTAGAAGAGAAACAAATGAAAAAGACGTGGCATTCAAAATATTGTATTGTGGGATATGTCACACAGATCTTCACCTGATGAAGAACGAATTGGGCACATCCACCTATCCATTAGTTCCTGGGCATGAAATTGTTGGTATAGTGACAAATGTAGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTAGGTGTTGGCTACTTGATTGACTCGTGTCGATCATGTCAAAATTGTACTGAAAATCTTGAAAGTTATTGTCCCGGATTTATATCCACATTCGGTGTTAAGTATCGTGATGGCACCACATATGGAGGTTACTCTGACTCAATGGTTGTAGACGAGCACTTTGTAGTTCATATTCCCGATGGTTTACCACTTGATGCCGCTGCTCCCCTTCTCTGCGCCGGTATCACAGTGTATAGTCCTCTTCGATATTTTGGGCTCGACAAGCCTGGTCAACATATAGGCGTTGTTGGTCTTGGTGGAGTTGGTCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAATGTGACTGTAATTAGCACATCGCCTAATAAAGAAAAGGAAGCAATAGAACATTTAGGAGCTGACTCATTTTTTATAAGTCAGGACCAAGCTAAGATGCAGGCTGCAATGGGTACTTTAGATGGCATCATTGATACAGTTTCAGCTGATCATCCTCTCTTACCTCTTATTGGATTGTTGAAATCTCATGGAAAACTTGTAATGGTTGGTGTTCCAATGAAGCCTCTGGAGCTCCATGTCGTTCCTTTACTTTCGGGGAGAAAGATGATAGTTGGAAGTTTTACTGGAGGAATGAAAGAGACTCAAGATATGATTGATTTTGCTGCTAAACACGATTTAAAACCTAACGTTGAAGTCATTCCTATGGATTATGTTAACATCGCAATGGACCGACTCGTCAAAGCAGATGTCAAATATCGATTTGTGATTAACATTGGAAATACTCTCAAACCAAGCTCTTAA 1077 0.4104 MATQPEHPMKAFGWAARDSSGVLSPYNFFRRETNEKDVAFKILYCGICHTDLHLMKNELGTSTYPLVPGHEIVGIVTNVGSKVEKFKVGDKVGVGYLIDSCRSCQNCTENLESYCPGFISTFGVKYRDGTTYGGYSDSMVVDEHFVVHIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGQHIGVVGLGGVGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFFISQDQAKMQAAMGTLDGIIDTVSADHPLLPLIGLLKSHGKLVMVGVPMKPLELHVVPLLSGRKMIVGSFTGGMKETQDMIDFAAKHDLKPNVEVIPMDYVNIAMDRLVKADVKYRFVINIGNTLKPSS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04543 358 Pfam Alcohol dehydrogenase GroES-like domain 36 148 IPR013154 -
Trre15g04543 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre15g04543 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 319 IPR036291 -
Trre15g04543 358 Gene3D - 14 349 - -
Trre15g04543 358 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Trre15g04543 358 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Trre15g04543 358 CDD CAD1 12 348 IPR047109 GO:0016616
Trre15g04543 358 PANTHER ALDEHYDE REDUCTASE 5 353 IPR047109 GO:0016616
Trre15g04543 358 FunFam Uncharacterized protein 14 163 - -
Trre15g04543 358 SUPERFAMILY GroES-like 18 182 IPR011032 -
Trre15g04543 358 SMART PKS_ER_names_mod 21 348 IPR020843 GO:0016491
Trre15g04543 358 Gene3D - 164 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04543 Trre-Chr15 56233687 56238373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04543 10 357 Monolignol Biosynthesis Gene Families AT4G37990 68.195 1.14e-161 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04543 K23232 - tpra:123922700 608.986