Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04540 ATGGACAATAACAAGTGTGGATGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCCTCAGCTTCTTCTAGACACTCTCCTAACACTATCCCTCGTACTAGTGTTGTTCATGATGCAGCAACTGAGACGCGATATTTGAATGCTAGCAATCGAGAACTGTGTCCTCCGAATGAAGCTAGGCTCTCTTCTGATAATCCTGATCCACCACCTCAGGAAAACAAGGCTCCTTGTCAGCTCCTTCAATTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCTCCGGCAAAACCAGGTTCAGGAGTTACGGTAGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTTGAGAATCATCTTTTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTGGCCTTCCTCCATAACGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGTCCTCAAGGAGACAAAACACATGTTTCTACTAGAGTTGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTAACTGCTAAGAGCGATGTTTATAGTTTCGGAGTTGTGTTACTCGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGTCCAAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCGTATTTAGCTGACAAGCGAAAACTTTACCAACTTGTTGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGCAGTGCAGAAAATTGCTCAGTTGGCTTATAGTTGCCTCAGTAGAGACCCTAAATGCCGTCCAAACATGGACGAAGTTGTGAACACTCTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGGTTATCTCAACAAGGGAGACGAAAGAAGAAACCGGATGGAACTCCGCATATCACTTATACACATTCCAAGAGCATGAGGGCTTCGCCTTTGAATACCGGCAAACACCTACGATGA 1284 0.4338 MDNNKCGCWSVLKRGVCKPSASSRHSPNTIPRTSVVHDAATETRYLNASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKCRPNMDEVVNTLTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRASPLNTGKHLR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04540 427 MobiDBLite consensus disorder prediction 53 74 - -
Trre15g04540 427 Gene3D Transferase(Phosphotransferase) domain 1 180 390 - -
Trre15g04540 427 ProSitePatterns Protein kinases ATP-binding region signature. 100 132 IPR017441 GO:0005524
Trre15g04540 427 ProSiteProfiles Protein kinase domain profile. 94 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04540 427 Pfam Protein tyrosine and serine/threonine kinase 98 373 IPR001245 GO:0004672|GO:0006468
Trre15g04540 427 FunFam Probable serine/threonine-protein kinase PBL8 180 395 - -
Trre15g04540 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Trre15g04540 427 MobiDBLite consensus disorder prediction 391 427 - -
Trre15g04540 427 CDD STKc_IRAK 100 376 - -
Trre15g04540 427 PANTHER OS01G0588500 PROTEIN-RELATED 62 377 - -
Trre15g04540 427 SUPERFAMILY Protein kinase-like (PK-like) 76 380 IPR011009 -
Trre15g04540 427 FunFam Serine/threonine-protein kinase BIK1 62 179 - -
Trre15g04540 427 Gene3D Phosphorylase Kinase; domain 1 70 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04540 Trre-Chr15 56156117 56158865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04540 82 373 Glycoside Hydrolase AT3G07070 55.743 3.70e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g04540 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04540 - - gmx:100785385 806.208