Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04536 ATGGAGCTTCATTTGGGCCTTGCTCTCTCCACTTATAATTCGTGTGCCTATGATGCTACTACTAAAATCCATGATTTCCCTTTCAACCATAATACTAATACTAATAAGAAACGTAGTTTTTCCCATCTAGTCTTCGAGCATGCAGCTGAAAATTCTTGTACTACCAACTTTCCTACTCTTTCTCTCCTCCCATTAACTCCTGGCCATTCAGATGATCATGATCATCAACACTGCAGTTATAGTTCCAACACCACCATCACCAAGAGCGATGAGAATGATGAAGAAGCTTTAGTGGGATGGCCCCCGGTTAATCATCAAAGGAAGAAACATCGTTGTAATGATGAGGATGATGATTATGATCATAATCAGAGAAATTTTGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAGGTTAATCTAACTATGCACCATTCATTTCACACTCTCAACCAAACTTTGATCAACATGTTTGGAAAATGTGATGGTCAACAATATGAATTGGTTTATCAAGACAAAGAAGGTGATTGGCTCCTTGCTCAAGATATTTCATGGAGAAGTTTCACTCAATGTGCACAACGCCTCAAATTGCTCAAGAGCAAAGGATAA 612 0.3905 MELHLGLALSTYNSCAYDATTKIHDFPFNHNTNTNKKRSFSHLVFEHAAENSCTTNFPTLSLLPLTPGHSDDHDHQHCSYSSNTTITKSDENDEEALVGWPPVNHQRKKHRCNDEDDDYDHNQRNFVKVKMEGEGIARKVNLTMHHSFHTLNQTLINMFGKCDGQQYELVYQDKEGDWLLAQDISWRSFTQCAQRLKLLKSKG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04536 203 Pfam AUX/IAA family 163 201 IPR033389 -
Trre15g04536 203 Pfam AUX/IAA family 30 160 IPR033389 -
Trre15g04536 203 ProSiteProfiles PB1 domain profile. 124 203 IPR000270 GO:0005515
Trre15g04536 203 SUPERFAMILY CAD & PB1 domains 120 198 - -
Trre15g04536 203 Gene3D - 119 203 - -
Trre15g04536 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 201 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04536 Trre-Chr15 56067670 56070174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04536 124 201 B3 DNA Binding Superfamily AT1G19220 34.118 1.32e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre15g04536 AUX_IAA 1.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04536 K14484 - gmx:100808466 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04536 15 56067670 56070174 Trre15g04536 15 56067670 56070174 ECH