Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04519 ATGTCAAGCTGCAGCATCGATGTTGCACCTGCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGCTAACCAGGGCATGAATAATAATCCAGAATATAGGATTAGAACTGCAGGAGGATCAAGTTCGAAATACAGCAACGATAGGATTGCAATGCGTACTACTGCACCACCGGCAACCACTCAAGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTATAACCAGTTCATAAAGGAAGAGATTCAGAGGATTAAGGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTTAGTACTGCTGCCAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTCATGTTGGAGACCAACAATCAAGCTAAGATGGAGAATGTATCTGAGAAGCGTTTGATGTCAAGGGCTGCACTGCACTAA 579 0.4525 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGANQGMNNNPEYRIRTAGGSSSKYSNDRIAMRTTAPPATTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQAKMENVSEKRLMSRAALH 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04519 192 CDD HMG-box_SF 121 157 - -
Trre15g04519 192 Gene3D High mobility group box domain 105 184 IPR036910 -
Trre15g04519 192 FunFam Axial regulator YABBY 112 184 - -
Trre15g04519 192 Pfam YABBY protein 10 167 IPR006780 GO:0007275
Trre15g04519 192 PANTHER PROTEIN YABBY 6-RELATED 1 177 IPR006780 GO:0007275
Trre15g04519 192 SUPERFAMILY HMG-box 104 160 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04519 Trre-Chr15 55852779 55857585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04519 7 177 C2C2-YABBY Transcription Factor Family AT2G26580 72.832 2.74e-87 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre15g04519 YABBY 5.7e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04519 K25796 - gmx:100804731 317.39