Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04501 ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCAGAAATAAGACACCCTCTTTTGAAGAGAAGAGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGAGCTTATGATCAAGCAGCAATTTTAATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACACAAACTCCTGAAGGTGATCCAAAGAGTAGTACAAGCCCTAATCAAGACAAACCTTCAACTTCATCAAAGGATCTAGAAGAAATCTTACATGCTAAGCTTCGAAAATGCGGCAAATTACCATCTCCTTCAATGACTTGTTTAAGGCTTGACACAGAAAATTCTCACATCGGAGTGTGGCAAAAACGTGCCGGGAAGTGTTCAGATTCAAATTGGGTTATGACTGTTCAACTTGGAAAAAAGAAGAGTATTATAACCGAAGATAGTAGCGGTAGTAGCAGTAGTAGTTTTGTGCCTTCATCGGTGGTGGCAACAGAGGAGGAGATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAATTGTCCTAGTCCATCAATTAACAATAATACTAAACAAGGAAATGATATTGATAACACTTTTTTTCTTTAA 660 0.3864 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTSPNQDKPSTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKKSIITEDSSGSSSSSFVPSSVVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNNTKQGNDIDNTFFL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04501 219 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 MobiDBLite consensus disorder prediction 60 84 - -
Trre15g04501 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 158 - -
Trre15g04501 219 MobiDBLite consensus disorder prediction 60 88 - -
Trre15g04501 219 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Trre15g04501 219 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trre15g04501 219 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Trre15g04501 219 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04501 Trre-Chr15 55660524 55661888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04501 1 194 AP2-EREBP Transcription Factor Family AT1G15360 62.189 4.11e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g04501 AP2 8.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04501 - - gsj:114375848 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04501 15 55660524 55661888 Trre5g05203 5 53173201 53173922 ECH
Trre15g04501 15 55660524 55661888 Trre15g04501 15 55660524 55661888 ECH