Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04486 ATGCTGTCTGCGAGTGAGTGTTATCCCGGTTTAATCCCTACCAAGACTAAAAGCAGGCCTAACATGCCTATGGACTGTGTACAAATGCTTAGCCAAGATGATTGTGAAAGAAATAAAGATCGCAGGTTGTTGTATAATTTTACTCACTTTAAGAATATGTCTTGGGGTAATATTCCATATTCTGTTATACCTGTGTTGAAGATGGAAACTTGTGAGAAGGTTTGCCAACATGATTGTGTTTGTCGGGGTGCAGTATATAAGAACGGAAGCTGCAATAAATATAGGATTCCGCTTATTTATGGCAGGGTTCAAAATGATTCTTCCACCGTGTCTGTGGCCCTATTTAAGATTCCTTCTTCGACAATTGCCATTATTGTTGTTGACAACAAGAGAAATCTAATAATGATCTTATCTATTGCTTTGGGTGTCGTTTCATTGATTTGTTTGATCTTTGCAGTGTCCATTTTCTTCACTTATAGGCGTCAAGTTAATAGATATGACGTGTTGTCTGAAAGTGAAAAGCTTGAATTTACAGAAGAATGTTCCTGGCGTTCGTTTTCTTTTGATGAACTTGCAAAATCAACTGGGGAATTTTCAGAAGAGATAGGGAGAGGATCATTTGGAGCTGTTTATAAAGGTAAAATAGGCAACAATAACAGAAGTATTGCTGTGAAGAGGCTGGAGGAGAAATTTGCTGATGAAGGGGAGAGAGAATTCCAAGCTGAAATTACTGCCATTGCTCGAACTCATCATAGAAATTTGGTTAAGCTTATTGGTTTCTGCCATTGCTCCTTGTTTATGAATTTGTCAGCAAAGGGTCTCTTGCAAATCTGCTCTTTGAAGGGGAAATGA 852 0.3826 MLSASECYPGLIPTKTKSRPNMPMDCVQMLSQDDCERNKDRRLLYNFTHFKNMSWGNIPYSVIPVLKMETCEKVCQHDCVCRGAVYKNGSCNKYRIPLIYGRVQNDSSTVSVALFKIPSSTIAIIVVDNKRNLIMILSIALGVVSLICLIFAVSIFFTYRRQVNRYDVLSESEKLEFTEECSWRSFSFDELAKSTGEFSEEIGRGSFGAVYKGKIGNNNRSIAVKRLEEKFADEGEREFQAEITAIARTHHRNLVKLIGFCHCSLFMNLSAKGLLQICSLKGK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04486 283 Pfam Protein tyrosine and serine/threonine kinase 198 262 IPR001245 GO:0004672|GO:0006468
Trre15g04486 283 SUPERFAMILY Protein kinase-like (PK-like) 175 264 IPR011009 -
Trre15g04486 283 Gene3D Phosphorylase Kinase; domain 1 168 269 - -
Trre15g04486 283 ProSitePatterns Protein kinases ATP-binding region signature. 202 225 IPR017441 GO:0005524
Trre15g04486 283 ProSiteProfiles Protein kinase domain profile. 196 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g04486 283 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04486 Trre-Chr15 55494272 55495123 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04486 135 261 Receptor kinase-like Gene Family AT2G43700 39.062 2.20e-19 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre15g04486 PK_Tyr_Ser-Thr 2.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04486 - - cam:101496142 402.905