LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04465	ATGGGCGATTGGGTCTCGTCGGATGATAAAAGCCAACTGCTGAAAACAACTATTCAATTTGAGAAGCTGCAGAAGCTTCTTTCGATTGAAAAAAGCCCTCTCGCTGACAAATTGATTGAGACAATTATTCAACCTGATGTTGTTCCTAGTTCTGTTGAATTTCTAGCTATGGATCATAGACCTCAACTTCAGTGGAAGGCTGCTTGGTTACTAGCATACATAGCATCTGGAACTTCTAAGCACACTAAGGCGGTCATTGATCACGGGGCAGTGCCCATATTTGTCAAGCTACTTAGTTCACCTAGTCATCATGCTCGCGAAAACGCTGCCTGGGCATTGGGAAACATTGCCGCTGATTCCCCTAGTTGCCGTGATCTTGTTCTCAGTCATGGTGCTCTCATCCCACTGTTATCCCACTTCAATGACCAATCAAACCTTAGAAATACCATGTGGACTCTGTTAAACTTTCTCGGGGGCAACCCACAACCCCCATTTGAGCAGGTGAGGCCAGCCCTTCCCGCTATCCAGCATTTGCTTTTTTCCAATGATGAACGAGTCCTGGCAGATACGTGTCGGGCACTCTCATTTCTTTCTTATGGACCACCAAAGGACAAAATCCAAGCCGTCATTGACGCAGGTGTATGTGCCAGACTGGTGCAGCTCCTTCTCCACCCATCTCCTTCAGTGCTGCTTCCTGCTCTTCACACCGTCGGAAATATTGTAACCGGAGGCGATATGCAGACTCAGGTTGTTATCAATCATGGTTTACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCACGACAAAAGTATTCAGATAGAGGCTTGCTGGACTATAGCAAACATCACATCCGTAAACACCGAGCAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTTCCCTAGTCAATCTCTTTCAAAATGCCGAGTTTGACATTAAAAAAGAAGCTGCATGGGCATTCTATAATGCTTCATCCGGCGGTACCAATGACCAAATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGTCTATGTGTGATTTACTTGTTTGCCCTGATCCAGAAATTGTTACTATCTGTTTAGAAGGTCTTGACAATTTTCTGAAGGTTGGAAAAGCGGAGAAAAGCTTTGGTAACATGAGAGATGATGTCAACCTGTATGCTCGGATGATAAATGATGCTGAGGGATTGGTAAAGATTGAATACTTGCAGAGTCATGACAACAATGAAATTTCTGAGAAGGCTGTTAAAATTCTCAAGACATATTATTTGTTGGAAGACGAAGAAATCAGAATATGA	1302	0.4401	MGDWVSSDDKSQLLKTTIQFEKLQKLLSIEKSPLADKLIETIIQPDVVPSSVEFLAMDHRPQLQWKAAWLLAYIASGTSKHTKAVIDHGAVPIFVKLLSSPSHHARENAAWALGNIAADSPSCRDLVLSHGALIPLLSHFNDQSNLRNTMWTLLNFLGGNPQPPFEQVRPALPAIQHLLFSNDERVLADTCRALSFLSYGPPKDKIQAVIDAGVCARLVQLLLHPSPSVLLPALHTVGNIVTGGDMQTQVVINHGLLPCLLSLLTHNHDKSIQIEACWTIANITSVNTEQIQAVIEAGLIASLVNLFQNAEFDIKKEAAWAFYNASSGGTNDQIKYLVSQGCIKSMCDLLVCPDPEIVTICLEGLDNFLKVGKAEKSFGNMRDDVNLYARMINDAEGLVKIEYLQSHDNNEISEKAVKILKTYYLLEDEEIRI	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04465	433	Gene3D	-	1	425	IPR011989	-
	Trre15g04465	433	FunFam	Importin subunit alpha	2	425	-	-
	Trre15g04465	433	Pfam	Atypical Arm repeat	386	429	IPR032413	-
	Trre15g04465	433	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	89	131	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	330	370	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	244	285	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	202	242	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	78	118	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	160	199	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	287	327	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	120	158	IPR000225	GO:0005515
	Trre15g04465	433	SMART	arm_5	35	76	IPR000225	GO:0005515
	Trre15g04465	433	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	255	298	IPR000225	GO:0005515
	Trre15g04465	433	SUPERFAMILY	ARM repeat	20	424	IPR016024	-
	Trre15g04465	433	Pfam	Armadillo/beta-catenin-like repeat	79	118	IPR000225	GO:0005515
	Trre15g04465	433	Pfam	Armadillo/beta-catenin-like repeat	204	241	IPR000225	GO:0005515
	Trre15g04465	433	Pfam	Armadillo/beta-catenin-like repeat	245	285	IPR000225	GO:0005515
	Trre15g04465	433	Pfam	Armadillo/beta-catenin-like repeat	287	326	IPR000225	GO:0005515
	Trre15g04465	433	PANTHER	IMPORTIN ALPHA	6	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04465	Trre-Chr15	55365770	55367999	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g04465	42	147	U-box Gene Family	AT3G54790	30.645	2.58e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04465	K15042		-	gmx:100780020	580.867